当前解析结果
SmilChr04G000674| 统一新 Gene ID | SmilChr04G000674 |
|---|---|
| 名称 | SmilChr04G000674 |
| 描述 | uncharacterized SmilChr04G000674 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 7651783 - 7655599 / + |
| NCBI Gene ID | LOC131022930 |
|---|---|
| GeneID | 131022930 |
| locus_tag | - |
| NCBI Name | LOC131022930 |
| 原始查询 | SmilChr04G000674 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0484800; species=rice; confidence=medium |
| 产物 | hit=Os06g0484800; species=rice; confidence=medium |
| Arabidopsis | AT4G29090 (AT4G29090)Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829030] identity=26.7; qcov=0.443; evalue=3.85e-47; confidence=low |
| Rice | Os06g0484800- identity=35.5; qcov=0.483; evalue=1.91e-107; confidence=medium |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF03372 (Exo_endo_phos); PF13456 (RVT_3); PF13966 (zf-RVT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022930 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057808453.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057808453.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057808453.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057808453.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057808453.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:7651790 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A4,B109,B112,B66,C79 |
Chr4:7651805 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A5,B29 |
Chr4:7651812 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A4,B109,B112,B66,C79 |
Chr4:7651827 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:7651842 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B68,D3 |
Chr4:7651863 |
GC |
G |
1bp_deletion | frameshift_variant | 14 | A14,A24,B109,B112,B135,B28,B46,B50,B66,B71,B9,C79,D2,D3 |
Chr4:7651865 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr4:7651874 |
TG |
T |
1bp_deletion | frameshift_variant | 15 | B107,B115,B124,B130,B23,B54,B64,B79,B8,B83,C2,C53,C83,C87,D11 |
Chr4:7651900 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B68 |
Chr4:7651914 |
G |
A |
EMS_canonical_SNV | stop_gained | 46 | A1,A15,A20,A5,A7,A9,B102,B109,B132,B140,B16,B21,B24,B36,B38,B48,B49,B50,B52,B59,B63,B67,B72,B73,B74,B86,B90,B92,C19,C29,C30,C36,C40,C47,C5,C54,C61,C64,C66,C67,C71,C72,C77,D11,D3,D8 |
Chr4:7651985 |
GT |
G |
1bp_deletion | frameshift_variant | 20 | A23,B105,B123,B29,B31,B36,B39,B51,B69,B87,C14,C23,C25,C29,C3,C49,C58,C65,C69,C8 |
Chr4:7651988 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B21,B65 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057808453.1PF03372
Exo_endo_phos 5-228 aa
PF00078
RVT_1 414-675 aa
PF13966
zf-RVT 920-993 aa
PF13456
RVT_3 1093-1213 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808453.1 |
Pfam | PF03372 |
Exo_endo_phos | Domain | 5 | 228 | 8.7e-11 | 42.7 | Endonuclease/Exonuclease/phosphatase family |
XP_057808453.1 |
Pfam | PF00078 |
RVT_1 | Domain | 414 | 675 | 3.8e-27 | 96.2 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057808453.1 |
Pfam | PF13966 |
zf-RVT | Domain | 920 | 993 | 1.2e-15 | 58.7 | zinc-binding in reverse transcriptase |
XP_057808453.1 |
Pfam | PF13456 |
RVT_3 | Domain | 1093 | 1213 | 1.4e-13 | 51.5 | Reverse transcriptase-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。