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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G000691

染色体: Chr04 坐标: 8045388-8050027 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G000691
名称SmilChr04G000691
描述acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic-like
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向8045388 - 8050027 / +

ID 对照

NCBI Gene IDLOC131022560
GeneID131022560
locus_tag-
NCBI NameLOC131022560
原始查询SmilChr04G000691

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic-like
产物acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha%2C chloroplastic-like
ArabidopsisAT2G38040 (CAC3)
acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit [Source:NCBI gene (formerly Entrezgene);Acc:818382]
identity=60.7; qcov=0.983; evalue=0; confidence=high
Rice-
-
GOGO:0003989 (acetyl-CoA carboxylase activity); GO:0006633 (fatty acid biosynthetic process); GO:0009317 (acetyl-CoA carboxylase complex); GO:0016743 (carboxyl- or carbamoyltransferase activity)
KEGGsmil00061 (Fatty acid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00620 (Pyruvate metabolism - Salvia miltiorrhiza (redroot sage)); smil00640 (Propanoate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01212 (Fatty acid metabolism - Salvia miltiorrhiza (redroot sage))
PfamPF01039 (Carboxyl_trans); PF03255 (ACCA)
InterPro-
eggNOG-
NRGeneID:131022560

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 0.80000 XP_057808047.1
2 Mitochondrion 线粒体 0.20000 XP_057808047.1
3 Chloroplast membrane 叶绿体膜 0.20000 XP_057808047.1
4 Nucleus 细胞核 0.00000 XP_057808047.1
5 Chromosome 染色体 0.00000 XP_057808047.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:8046512 C T EMS_canonical_SNV CDS_variant 2 A8,C48
Chr4:8046642 G A EMS_canonical_SNV CDS_variant 1 C59
Chr4:8047402 C T EMS_canonical_SNV CDS_variant 2 C86,C87
Chr4:8047408 A AC 1bp_insertion frameshift_variant 74 A13,A16,A19,A5,A7,A8,A9,B102,B103,B108,B112,B113,B117,B121,B123,B124,B126,B129,B13,B132,B138,B15,B18,B23,B24,B26,B37,B38,B4,B42,B6,B60,B62,B68,B7,B75,B79,B8,B81,B9,B93,B97,C10,C13,C16,C21,C27,C29,C3,C32,C33,C34,C36,C38,C4,C41,C42,C43,C46,C47,C49,C51,C52,C53,C55,C6,C62,C63,C67,C68,C70,C86,C87,C9
Chr4:8047708 G A EMS_canonical_SNV CDS_variant 1 B95
Chr4:8047891 G A EMS_canonical_SNV CDS_variant 1 C57
Chr4:8047899 C T EMS_canonical_SNV CDS_variant 1 C57
Chr4:8047971 C T EMS_canonical_SNV CDS_variant 1 D8
Chr4:8048324 G A EMS_canonical_SNV CDS_variant 1 B9
Chr4:8048654 G A EMS_canonical_SNV CDS_variant 1 B128
Chr4:8048802 C T EMS_canonical_SNV CDS_variant 1 B15
Chr4:8048860 G A EMS_canonical_SNV CDS_variant 4 B59,B86,C52,C66

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057808047.1
751 aa
N
1
376
751
ACCA
Carboxyl_trans
C
PF03255 ACCA 99-407 aa PF01039 Carboxyl_trans 176-350 aa
XP_057808048.1
751 aa
N
1
376
751
ACCA
Carboxyl_trans
C
PF03255 ACCA 99-407 aa PF01039 Carboxyl_trans 176-350 aa
XP_057808049.1
751 aa
N
1
376
751
ACCA
Carboxyl_trans
C
PF03255 ACCA 99-407 aa PF01039 Carboxyl_trans 176-350 aa
XP_057808050.1
751 aa
N
1
376
751
ACCA
Carboxyl_trans
C
PF03255 ACCA 99-407 aa PF01039 Carboxyl_trans 176-350 aa
XP_057808051.1
751 aa
N
1
376
751
ACCA
Carboxyl_trans
C
PF03255 ACCA 99-407 aa PF01039 Carboxyl_trans 176-350 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057808047.1 Pfam PF03255 ACCA Family 99 407 2.7e-131 438.1 Acetyl co-enzyme A carboxylase carboxyltransferase-like
XP_057808047.1 Pfam PF01039 Carboxyl_trans Family 176 350 3.3e-09 36.6 Carboxyl transferase domain
XP_057808048.1 Pfam PF03255 ACCA Family 99 407 2.7e-131 438.1 Acetyl co-enzyme A carboxylase carboxyltransferase-like
XP_057808048.1 Pfam PF01039 Carboxyl_trans Family 176 350 3.3e-09 36.6 Carboxyl transferase domain
XP_057808049.1 Pfam PF03255 ACCA Family 99 407 2.7e-131 438.1 Acetyl co-enzyme A carboxylase carboxyltransferase-like
XP_057808049.1 Pfam PF01039 Carboxyl_trans Family 176 350 3.3e-09 36.6 Carboxyl transferase domain
XP_057808050.1 Pfam PF03255 ACCA Family 99 407 2.7e-131 438.1 Acetyl co-enzyme A carboxylase carboxyltransferase-like
XP_057808050.1 Pfam PF01039 Carboxyl_trans Family 176 350 3.3e-09 36.6 Carboxyl transferase domain
XP_057808051.1 Pfam PF03255 ACCA Family 99 407 2.7e-131 438.1 Acetyl co-enzyme A carboxylase carboxyltransferase-like
XP_057808051.1 Pfam PF01039 Carboxyl_trans Family 176 350 3.3e-09 36.6 Carboxyl transferase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA
XM_057952066.1
TTTTTTCACTCTAATTTTCTCTCTTCTGCTGAGCAATGAATTTCTCTCTTCACTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTCTTCTGCATCACGCTGGCCCTCTTCCGTTTTAATGGCCGAACCCAAACCCAAAGTGGCTAGCTCTCCTCCATCACTCAACACACAGTTTCAGTGAACAGCTTCAATCTGACGATCTCTCCTATGCTCCGCCTTACATAATAGTTTCTCTCTCCCTCACTCGGACCTCTCTTCAATTG...
XM_057952065.1
TTTTTTCACTCTAATTTTCTCTCTTCTGCTGAGCAATGAATTTCTCTCTTCACTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTCTTCTGCATCACGCTGGCCCTCTTCCGTTTTAATGGCCGAACCCAAACCCAAAGTGGCTAGCTCTCCTCCATCACTCAACACACAGTTTCAGTGAACAGCTTCAATCTGACGATCTCTCCTATGCTCCGCCTTACATAATAGTTTCTCTCTCCCTCACTCGGACCTCTCTTCAATTG...

CDS

5 records

下载 CDS FASTA
LOC131022560
ATGGCTTCGATGACCCAGTGTCCGACATCATTTTCTGGGAATTTGTCTTCCAAGCCTACTGCTTCTGATCTTCTTAGGAGCTCAAATAATGGTGCTTCCGGTGTTCCCCTAAGAGCCCTTGGTAGGGCCCAACTGGGAGCGAAAAGGAGGGACTTCTCTATATCTGCAAAGGTTAGGAAAACAAAGAAGCATGAATACCCATGGCCAGAAGATCCGGACCTGAACGTGAAGGGTGGAGTCCTTAGCCACTTGTCACCTTT...
LOC131022560
ATGGCTTCGATGACCCAGTGTCCGACATCATTTTCTGGGAATTTGTCTTCCAAGCCTACTGCTTCTGATCTTCTTAGGAGCTCAAATAATGGTGCTTCCGGTGTTCCCCTAAGAGCCCTTGGTAGGGCCCAACTGGGAGCGAAAAGGAGGGACTTCTCTATATCTGCAAAGGTTAGGAAAACAAAGAAGCATGAATACCCATGGCCAGAAGATCCGGACCTGAACGTGAAGGGTGGAGTCCTTAGCCACTTGTCACCTTT...

Protein

5 records

下载 Protein FASTA
XP_057808047.1
MASMTQCPTSFSGNLSSKPTASDLLRSSNNGASGVPLRALGRAQLGAKRRDFSISAKVRKTKKHEYPWPEDPDLNVKGGVLSHLSPFKPLKEKPKPVTLAFEKPLMDLQKKIVDVQKMANDTGLDFSDQIISLENKYQQALKDLYTHLTPIQRVNIARHPNRPTFLDHVFNITEKFVELHGDRAGYDDPAVVTGLGTINGRSYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADL...
XP_057808048.1
MASMTQCPTSFSGNLSSKPTASDLLRSSNNGASGVPLRALGRAQLGAKRRDFSISAKVRKTKKHEYPWPEDPDLNVKGGVLSHLSPFKPLKEKPKPVTLAFEKPLMDLQKKIVDVQKMANDTGLDFSDQIISLENKYQQALKDLYTHLTPIQRVNIARHPNRPTFLDHVFNITEKFVELHGDRAGYDDPAVVTGLGTINGRSYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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