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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G000692

染色体: Chr04 坐标: 8065349-8070174 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G000692
名称SmilChr04G000692
描述acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic-like
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向8065349 - 8070174 / +

ID 对照

NCBI Gene IDLOC131022561
GeneID131022561
locus_tag-
NCBI NameLOC131022561
原始查询SmilChr04G000692

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic-like
产物acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha%2C chloroplastic-like
ArabidopsisAT2G38040 (CAC3)
acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit [Source:NCBI gene (formerly Entrezgene);Acc:818382]
identity=61.2; qcov=0.983; evalue=0; confidence=high
Rice-
-
GOGO:0003989 (acetyl-CoA carboxylase activity); GO:0006633 (fatty acid biosynthetic process); GO:0009317 (acetyl-CoA carboxylase complex); GO:0016743 (carboxyl- or carbamoyltransferase activity)
KEGGsmil00061 (Fatty acid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00620 (Pyruvate metabolism - Salvia miltiorrhiza (redroot sage)); smil00640 (Propanoate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01212 (Fatty acid metabolism - Salvia miltiorrhiza (redroot sage))
PfamPF01039 (Carboxyl_trans); PF03255 (ACCA)
InterPro-
eggNOG-
NRGeneID:131022561

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 0.80000 XP_057808052.1
2 Mitochondrion 线粒体 0.20000 XP_057808052.1
3 Chloroplast membrane 叶绿体膜 0.20000 XP_057808052.1
4 Chloroplast stroma 叶绿体基质 0.20000 XP_057808052.1
5 Nucleus 细胞核 0.00000 XP_057808052.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:8068013 C T EMS_canonical_SNV CDS_variant 1 B111
Chr4:8068150 C T EMS_canonical_SNV CDS_variant 1 D7
Chr4:8068160 G A EMS_canonical_SNV CDS_variant 2 B84,C45
Chr4:8068616 G A EMS_canonical_SNV CDS_variant 2 C51,C57
Chr4:8068666 G A EMS_canonical_SNV CDS_variant 1 B23
Chr4:8068673 G A EMS_canonical_SNV CDS_variant 2 B86,D3
Chr4:8068711 G A EMS_canonical_SNV CDS_variant 1 D10
Chr4:8068745 G A EMS_canonical_SNV CDS_variant 1 B48
Chr4:8068748 C T EMS_canonical_SNV stop_gained 9 B10,B139,B44,B75,B86,C16,C36,C43,D3
Chr4:8068766 G A EMS_canonical_SNV CDS_variant 5 A9,B16,B77,B94,D8
Chr4:8068768 G A EMS_canonical_SNV CDS_variant 3 B140,C29,C71
Chr4:8068769 G A EMS_canonical_SNV CDS_variant 1 B48

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057808052.1
751 aa
N
1
376
751
ACCA
Carboxyl_trans
C
PF03255 ACCA 99-407 aa PF01039 Carboxyl_trans 176-344 aa
XP_057808053.1
751 aa
N
1
376
751
ACCA
Carboxyl_trans
C
PF03255 ACCA 99-407 aa PF01039 Carboxyl_trans 176-344 aa
XP_057808054.1
751 aa
N
1
376
751
ACCA
Carboxyl_trans
C
PF03255 ACCA 99-407 aa PF01039 Carboxyl_trans 176-344 aa
XP_057808055.1
751 aa
N
1
376
751
ACCA
Carboxyl_trans
C
PF03255 ACCA 99-407 aa PF01039 Carboxyl_trans 176-344 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057808052.1 Pfam PF03255 ACCA Family 99 407 6.9e-131 436.7 Acetyl co-enzyme A carboxylase carboxyltransferase-like
XP_057808052.1 Pfam PF01039 Carboxyl_trans Family 176 344 4e-09 36.3 Carboxyl transferase domain
XP_057808053.1 Pfam PF03255 ACCA Family 99 407 6.9e-131 436.7 Acetyl co-enzyme A carboxylase carboxyltransferase-like
XP_057808053.1 Pfam PF01039 Carboxyl_trans Family 176 344 4e-09 36.3 Carboxyl transferase domain
XP_057808054.1 Pfam PF03255 ACCA Family 99 407 6.9e-131 436.7 Acetyl co-enzyme A carboxylase carboxyltransferase-like
XP_057808054.1 Pfam PF01039 Carboxyl_trans Family 176 344 4e-09 36.3 Carboxyl transferase domain
XP_057808055.1 Pfam PF03255 ACCA Family 99 407 6.9e-131 436.7 Acetyl co-enzyme A carboxylase carboxyltransferase-like
XP_057808055.1 Pfam PF01039 Carboxyl_trans Family 176 344 4e-09 36.3 Carboxyl transferase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057952069.1
CTCCTCCATCACTCAACACACAGTTTCAGTGAACAGCTTCAATCTGACGATCTCTCCTATGCTCCGCCTTACATAATAGTTTCTCTCTCCCTCACTCGGACCTCTCTTCAATTGCTCTCATTTGCCTCTTCATGACTTTTCAGGAACTTTGAGCTAGCGTGGCGGTTCGGCTTGATTTAGATTTTTCTGGTTGAACTGGTCAAAAGATGGCTTCGATGACCCAGTGTCCGACATCATTTTCTGGGAATTTGTCTTCCAAG...
XM_057952071.1
CATCACTCAACACACAGTTTCAGTGAACAGCTTCAATCTGACGATCTCTCCTATGCTCCGCCTTACATAATAGTTTCTCTCTCCCTCACTCGGACCTCTCTTCAATTGCTCTCATTTGCCTCTTCATGACTAATCAGATTGTGTCAATGCTGTTTTGTTGATCTGAATCTGAATTTGTAGTTTCAGGAACTTTGAGCTAGCGTGGCGGTTCGGCTTGATTTAGATTTTTCTGGTTGAACTGGTCAAAAGATGGCTTCGAT...

CDS

4 records

下载 CDS FASTA
LOC131022561
ATGGCTTCGATGACCCAGTGTCCGACATCATTTTCTGGGAATTTGTCTTCCAAGCCTACTGCTTCTGATCTTCTTAGGAGCTCAAATAATGGTGCTTCCGGTGTTCCCCTAAGAGCCCTTGGTAGGGCCCAACTGGGAGCGAAAAGGAGGGACTTCTCTATATCTGCAAAGGTTAGGAAAACAAAGAAGCATGAATACCCATGGCCAGAAGATCCGGACCTGAACGTGAAGGGTGGAGTCCTTAGCCACTTGTCACCTTT...
LOC131022561
ATGGCTTCGATGACCCAGTGTCCGACATCATTTTCTGGGAATTTGTCTTCCAAGCCTACTGCTTCTGATCTTCTTAGGAGCTCAAATAATGGTGCTTCCGGTGTTCCCCTAAGAGCCCTTGGTAGGGCCCAACTGGGAGCGAAAAGGAGGGACTTCTCTATATCTGCAAAGGTTAGGAAAACAAAGAAGCATGAATACCCATGGCCAGAAGATCCGGACCTGAACGTGAAGGGTGGAGTCCTTAGCCACTTGTCACCTTT...

Protein

4 records

下载 Protein FASTA
XP_057808052.1
MASMTQCPTSFSGNLSSKPTASDLLRSSNNGASGVPLRALGRAQLGAKRRDFSISAKVRKTKKHEYPWPEDPDLNVKGGVLSHLSPFKPLKEKPKPVTLAFEKPLMDLQKKIVDVQKMANDTGLDFSDQIISLENKYQQALKDLYTHLTPIQRVNIARHPNRPTFLDHVFNITEKFVELHGDRAGYDDPAVVTGLGTINGRSYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADL...
XP_057808053.1
MASMTQCPTSFSGNLSSKPTASDLLRSSNNGASGVPLRALGRAQLGAKRRDFSISAKVRKTKKHEYPWPEDPDLNVKGGVLSHLSPFKPLKEKPKPVTLAFEKPLMDLQKKIVDVQKMANDTGLDFSDQIISLENKYQQALKDLYTHLTPIQRVNIARHPNRPTFLDHVFNITEKFVELHGDRAGYDDPAVVTGLGTINGRSYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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