当前解析结果
SmilChr04G000700| 统一新 Gene ID | SmilChr04G000700 |
|---|---|
| 名称 | SmilChr04G000700 |
| 描述 | uncharacterized SmilChr04G000700 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 8157776 - 8159224 / + |
| NCBI Gene ID | LOC131022936 |
|---|---|
| GeneID | 131022936 |
| locus_tag | - |
| NCBI Name | LOC131022936 |
| 原始查询 | SmilChr04G000700 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859]; symbol=MUG7; hit=AT3G05850; species=arabidopsis; confidence=weak |
| 产物 | MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859]; symbol=MUG7; hit=AT3G05850; species=arabidopsis; confidence=weak |
| Arabidopsis | AT3G05850 (MUG7)MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859] identity=21.8; qcov=0.993; evalue=1.88e-24; confidence=weak |
| Rice | Os12g0597300- identity=28.6; qcov=0.509; evalue=2.12e-19; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022936 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057808460.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057808460.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057808460.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057808460.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057808460.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:8157777 |
TG |
T |
1bp_deletion | frameshift_variant | 7 | A8,B28,B89,C38,C69,C73,D2 |
Chr4:8157780 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B16 |
Chr4:8157802 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B59,B87,C52,C81,C82 |
Chr4:8157812 |
C |
T |
EMS_canonical_SNV | stop_gained | 16 | A8,B101,B112,B137,B25,B27,B29,B30,B67,B88,B99,C17,C21,C36,C60,C69 |
Chr4:8157817 |
G |
A |
EMS_canonical_SNV | stop_gained | 5 | B12,B87,C52,C69,C81 |
Chr4:8157817 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B12,B87,C52,C69,C81 |
Chr4:8157826 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A7,B115 |
Chr4:8157833 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B114,C61 |
Chr4:8157847 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A8,C50 |
Chr4:8157854 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C39,C75 |
Chr4:8157874 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B101,B108,B27,B35,C43 |
Chr4:8157875 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B115,C2 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。