当前解析结果
SmilChr04G000704| 统一新 Gene ID | SmilChr04G000704 |
|---|---|
| 名称 | SmilChr04G000704 |
| 描述 | secreted RxLR effector protein 161-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 8195683 - 8196330 / + |
| NCBI Gene ID | LOC131022939 |
|---|---|
| GeneID | 131022939 |
| locus_tag | - |
| NCBI Name | LOC131022939 |
| 原始查询 | SmilChr04G000704 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | secreted RxLR effector protein 161-like |
| 产物 | secreted RxLR effector protein 161-like |
| Arabidopsis | AT4G23160 (CRK8)cysteine-rich RECEPTOR-like kinase [Source:NCBI gene (formerly Entrezgene);Acc:828415] identity=39.3; qcov=0.805; evalue=3.11e-36; confidence=medium |
| Rice | Os11g0656500- identity=48.8; qcov=0.972; evalue=1.02e-60; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022939 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057808463.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057808463.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057808463.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057808463.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057808463.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:8195745 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A3 |
Chr4:8195747 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A3,B23,B95 |
Chr4:8195758 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | A16,B16 |
Chr4:8195758 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A16,B16 |
Chr4:8195766 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B16,C40 |
Chr4:8195798 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B106 |
Chr4:8195808 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B6,D11 |
Chr4:8195835 |
A |
AAT |
2bp_insertion | frameshift_variant | 1 | D9 |
Chr4:8195835 |
A |
AAT |
2bp_insertion | CDS_variant | 1 | D9 |
Chr4:8195864 |
AC |
A |
1bp_deletion | frameshift_variant | 51 | A14,A24,A25,A3,B105,B106,B115,B121,B123,B125,B129,B18,B2,B28,B31,B38,B39,B43,B45,B46,B49,B55,B58,B65,B74,B75,B79,B90,B91,B92,C1,C10,C15,C3,C31,C39,C42,C47,C48,C54,C59,C68,C69,C7,C77,C8,C83,C85,C86,C9,D8 |
Chr4:8195896 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B26,B58,B7,C59 |
Chr4:8195910 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A25,C40,C53,C71 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。