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TF 结合位点 TF 靶基因 EMS 突变
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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G000722

染色体: Chr04 坐标: 8494336-8498704 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G000722
名称SmilChr04G000722
描述pentatricopeptide repeat-containing protein At3g09060
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向8494336 - 8498704 / +

ID 对照

NCBI Gene IDLOC131022580
GeneID131022580
locus_tag-
NCBI NameLOC131022580
原始查询SmilChr04G000722

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At3g09060
产物pentatricopeptide repeat-containing protein At3g09060
ArabidopsisAT3G09060 (AT3G09060)
Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820059]
identity=51; qcov=0.997; evalue=0; confidence=high
RiceOs01g0852900
-
identity=42.8; qcov=1.01; evalue=0; confidence=medium
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131022580

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057808072.1
2 Nucleus 细胞核 0.00000 XP_057808072.1
3 Chromosome 染色体 0.00000 XP_057808072.1
4 Centromere 着丝粒 0.00000 XP_057808072.1
5 Chromatin 染色质 0.00000 XP_057808072.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:8494352 G A EMS_canonical_SNV CDS_variant 1 B41
Chr4:8494687 G A EMS_canonical_SNV CDS_variant 1 B113
Chr4:8494766 G A EMS_canonical_SNV CDS_variant 5 A15,B62,B9,C30,C72
Chr4:8495002 G A EMS_canonical_SNV CDS_variant 3 B131,C27,C55
Chr4:8495304 G A EMS_canonical_SNV CDS_variant 1 C84
Chr4:8495439 G A EMS_canonical_SNV CDS_variant 2 B41,D10
Chr4:8495706 G A EMS_canonical_SNV CDS_variant 4 B131,B57,C27,C55
Chr4:8495882 C T EMS_canonical_SNV CDS_variant 3 C57,C64,C66
Chr4:8495958 G A EMS_canonical_SNV CDS_variant 2 B124,B79
Chr4:8496056 C T EMS_canonical_SNV CDS_variant 2 B66,C79
Chr4:8496100 G A EMS_canonical_SNV CDS_variant 3 C21,C58,C78
Chr4:8496401 C T EMS_canonical_SNV CDS_variant 2 B41,D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057808072.1
692 aa
N
1
346
692
PPR_long
TPR_24
PPR
PPR_3
PPR_2
PPR
PPR_long
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_1
PPR_2
PPR
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
TPR_24
PPR_2
PPR
PPR_3
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_2
PPR
C
PF17177 PPR_long 22-138 aa PF23276 TPR_24 86-214 aa PF01535 PPR 88-111 aa PF13812 PPR_3 88-130 aa PF13041 PPR_2 117-166 aa PF01535 PPR 121-143 aa PF17177 PPR_long 147-265 aa PF13041 PPR_2 152-201 aa PF01535 PPR 156-184 aa PF13812 PPR_3 180-232 aa PF12854 PPR_1 184-215 aa PF13041 PPR_2 187-236 aa PF01535 PPR 190-220 aa PF13812 PPR_3 214-268 aa PF12854 PPR_1 218-241 aa PF01535 PPR 226-250 aa PF12854 PPR_1 256-287 aa PF13041 PPR_2 258-306 aa PF01535 PPR 261-289 aa PF13812 PPR_3 284-340 aa PF12854 PPR_1 292-322 aa PF01535 PPR 296-325 aa PF12854 PPR_1 326-356 aa PF13041 PPR_2 328-361 aa PF01535 PPR 331-360 aa PF13041 PPR_2 362-410 aa PF01535 PPR 366-395 aa PF13812 PPR_3 425-481 aa PF12854 PPR_1 428-461 aa PF13041 PPR_2 433-480 aa PF01535 PPR 436-464 aa PF23276 TPR_24 447-562 aa PF13041 PPR_2 467-516 aa PF01535 PPR 471-499 aa PF13812 PPR_3 472-512 aa PF13812 PPR_3 491-547 aa PF12854 PPR_1 498-530 aa PF13041 PPR_2 502-550 aa PF01535 PPR 505-534 aa PF13812 PPR_3 567-617 aa PF12854 PPR_1 568-596 aa PF13041 PPR_2 572-621 aa PF01535 PPR 577-605 aa PF13812 PPR_3 598-652 aa PF13041 PPR_2 607-655 aa PF01535 PPR 610-640 aa
XP_057808073.1
692 aa
N
1
346
692
PPR_long
TPR_24
PPR
PPR_3
PPR_2
PPR
PPR_long
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_1
PPR_2
PPR
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
TPR_24
PPR_2
PPR
PPR_3
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_2
PPR
C
PF17177 PPR_long 22-138 aa PF23276 TPR_24 86-214 aa PF01535 PPR 88-111 aa PF13812 PPR_3 88-130 aa PF13041 PPR_2 117-166 aa PF01535 PPR 121-143 aa PF17177 PPR_long 147-265 aa PF13041 PPR_2 152-201 aa PF01535 PPR 156-184 aa PF13812 PPR_3 180-232 aa PF12854 PPR_1 184-215 aa PF13041 PPR_2 187-236 aa PF01535 PPR 190-220 aa PF13812 PPR_3 214-268 aa PF12854 PPR_1 218-241 aa PF01535 PPR 226-250 aa PF12854 PPR_1 256-287 aa PF13041 PPR_2 258-306 aa PF01535 PPR 261-289 aa PF13812 PPR_3 284-340 aa PF12854 PPR_1 292-322 aa PF01535 PPR 296-325 aa PF12854 PPR_1 326-356 aa PF13041 PPR_2 328-361 aa PF01535 PPR 331-360 aa PF13041 PPR_2 362-410 aa PF01535 PPR 366-395 aa PF13812 PPR_3 425-481 aa PF12854 PPR_1 428-461 aa PF13041 PPR_2 433-480 aa PF01535 PPR 436-464 aa PF23276 TPR_24 447-562 aa PF13041 PPR_2 467-516 aa PF01535 PPR 471-499 aa PF13812 PPR_3 472-512 aa PF13812 PPR_3 491-547 aa PF12854 PPR_1 498-530 aa PF13041 PPR_2 502-550 aa PF01535 PPR 505-534 aa PF13812 PPR_3 567-617 aa PF12854 PPR_1 568-596 aa PF13041 PPR_2 572-621 aa PF01535 PPR 577-605 aa PF13812 PPR_3 598-652 aa PF13041 PPR_2 607-655 aa PF01535 PPR 610-640 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057808072.1 Pfam PF17177 PPR_long Repeat 22 138 5.6e-37 127.9 Pentacotripeptide-repeat region of PRORP
XP_057808072.1 Pfam PF23276 TPR_24 Repeat 86 214 2.5e-30 105.8 Pentatricopeptide repeat-containing protein
XP_057808072.1 Pfam PF01535 PPR Repeat 88 111 1.1e-96 311.3 PPR repeat
XP_057808072.1 Pfam PF13812 PPR_3 Repeat 88 130 1.2e-69 231.0 Pentatricopeptide repeat domain
XP_057808072.1 Pfam PF13041 PPR_2 Repeat 117 166 5.8e-157 510.5 PPR repeat family
XP_057808072.1 Pfam PF01535 PPR Repeat 121 143 1.1e-96 311.3 PPR repeat
XP_057808072.1 Pfam PF17177 PPR_long Repeat 147 265 5.6e-37 127.9 Pentacotripeptide-repeat region of PRORP
XP_057808072.1 Pfam PF13041 PPR_2 Repeat 152 201 5.8e-157 510.5 PPR repeat family
XP_057808072.1 Pfam PF01535 PPR Repeat 156 184 1.1e-96 311.3 PPR repeat
XP_057808072.1 Pfam PF13812 PPR_3 Repeat 180 232 1.2e-69 231.0 Pentatricopeptide repeat domain
XP_057808072.1 Pfam PF12854 PPR_1 Repeat 184 215 3.8e-126 411.2 PPR repeat
XP_057808072.1 Pfam PF13041 PPR_2 Repeat 187 236 5.8e-157 510.5 PPR repeat family
XP_057808072.1 Pfam PF01535 PPR Repeat 190 220 1.1e-96 311.3 PPR repeat
XP_057808072.1 Pfam PF13812 PPR_3 Repeat 214 268 1.2e-69 231.0 Pentatricopeptide repeat domain
XP_057808072.1 Pfam PF12854 PPR_1 Repeat 218 241 3.8e-126 411.2 PPR repeat
XP_057808072.1 Pfam PF01535 PPR Repeat 226 250 1.1e-96 311.3 PPR repeat
XP_057808072.1 Pfam PF12854 PPR_1 Repeat 256 287 3.8e-126 411.2 PPR repeat
XP_057808072.1 Pfam PF13041 PPR_2 Repeat 258 306 5.8e-157 510.5 PPR repeat family
XP_057808072.1 Pfam PF01535 PPR Repeat 261 289 1.1e-96 311.3 PPR repeat
XP_057808072.1 Pfam PF13812 PPR_3 Repeat 284 340 1.2e-69 231.0 Pentatricopeptide repeat domain
XP_057808072.1 Pfam PF12854 PPR_1 Repeat 292 322 3.8e-126 411.2 PPR repeat
XP_057808072.1 Pfam PF01535 PPR Repeat 296 325 1.1e-96 311.3 PPR repeat
XP_057808072.1 Pfam PF12854 PPR_1 Repeat 326 356 3.8e-126 411.2 PPR repeat
XP_057808072.1 Pfam PF13041 PPR_2 Repeat 328 361 5.8e-157 510.5 PPR repeat family
XP_057808072.1 Pfam PF01535 PPR Repeat 331 360 1.1e-96 311.3 PPR repeat
XP_057808072.1 Pfam PF13041 PPR_2 Repeat 362 410 5.8e-157 510.5 PPR repeat family
XP_057808072.1 Pfam PF01535 PPR Repeat 366 395 1.1e-96 311.3 PPR repeat
XP_057808072.1 Pfam PF13812 PPR_3 Repeat 425 481 1.2e-69 231.0 Pentatricopeptide repeat domain
XP_057808072.1 Pfam PF12854 PPR_1 Repeat 428 461 3.8e-126 411.2 PPR repeat
XP_057808072.1 Pfam PF13041 PPR_2 Repeat 433 480 5.8e-157 510.5 PPR repeat family
XP_057808072.1 Pfam PF01535 PPR Repeat 436 464 1.1e-96 311.3 PPR repeat
XP_057808072.1 Pfam PF23276 TPR_24 Repeat 447 562 2.5e-30 105.8 Pentatricopeptide repeat-containing protein
XP_057808072.1 Pfam PF13041 PPR_2 Repeat 467 516 5.8e-157 510.5 PPR repeat family
XP_057808072.1 Pfam PF01535 PPR Repeat 471 499 1.1e-96 311.3 PPR repeat
XP_057808072.1 Pfam PF13812 PPR_3 Repeat 472 512 1.2e-69 231.0 Pentatricopeptide repeat domain
XP_057808072.1 Pfam PF13812 PPR_3 Repeat 491 547 1.2e-69 231.0 Pentatricopeptide repeat domain
XP_057808072.1 Pfam PF12854 PPR_1 Repeat 498 530 3.8e-126 411.2 PPR repeat
XP_057808072.1 Pfam PF13041 PPR_2 Repeat 502 550 5.8e-157 510.5 PPR repeat family
XP_057808072.1 Pfam PF01535 PPR Repeat 505 534 1.1e-96 311.3 PPR repeat
XP_057808072.1 Pfam PF13812 PPR_3 Repeat 567 617 1.2e-69 231.0 Pentatricopeptide repeat domain
XP_057808072.1 Pfam PF12854 PPR_1 Repeat 568 596 3.8e-126 411.2 PPR repeat
XP_057808072.1 Pfam PF13041 PPR_2 Repeat 572 621 5.8e-157 510.5 PPR repeat family
XP_057808072.1 Pfam PF01535 PPR Repeat 577 605 1.1e-96 311.3 PPR repeat
XP_057808072.1 Pfam PF13812 PPR_3 Repeat 598 652 1.2e-69 231.0 Pentatricopeptide repeat domain
XP_057808072.1 Pfam PF13041 PPR_2 Repeat 607 655 5.8e-157 510.5 PPR repeat family
XP_057808072.1 Pfam PF01535 PPR Repeat 610 640 1.1e-96 311.3 PPR repeat
XP_057808073.1 Pfam PF17177 PPR_long Repeat 22 138 5.6e-37 127.9 Pentacotripeptide-repeat region of PRORP
XP_057808073.1 Pfam PF23276 TPR_24 Repeat 86 214 2.5e-30 105.8 Pentatricopeptide repeat-containing protein
XP_057808073.1 Pfam PF01535 PPR Repeat 88 111 1.1e-96 311.3 PPR repeat
XP_057808073.1 Pfam PF13812 PPR_3 Repeat 88 130 1.2e-69 231.0 Pentatricopeptide repeat domain
XP_057808073.1 Pfam PF13041 PPR_2 Repeat 117 166 5.8e-157 510.5 PPR repeat family
XP_057808073.1 Pfam PF01535 PPR Repeat 121 143 1.1e-96 311.3 PPR repeat
XP_057808073.1 Pfam PF17177 PPR_long Repeat 147 265 5.6e-37 127.9 Pentacotripeptide-repeat region of PRORP
XP_057808073.1 Pfam PF13041 PPR_2 Repeat 152 201 5.8e-157 510.5 PPR repeat family
XP_057808073.1 Pfam PF01535 PPR Repeat 156 184 1.1e-96 311.3 PPR repeat
XP_057808073.1 Pfam PF13812 PPR_3 Repeat 180 232 1.2e-69 231.0 Pentatricopeptide repeat domain
XP_057808073.1 Pfam PF12854 PPR_1 Repeat 184 215 3.8e-126 411.2 PPR repeat
XP_057808073.1 Pfam PF13041 PPR_2 Repeat 187 236 5.8e-157 510.5 PPR repeat family
XP_057808073.1 Pfam PF01535 PPR Repeat 190 220 1.1e-96 311.3 PPR repeat
XP_057808073.1 Pfam PF13812 PPR_3 Repeat 214 268 1.2e-69 231.0 Pentatricopeptide repeat domain
XP_057808073.1 Pfam PF12854 PPR_1 Repeat 218 241 3.8e-126 411.2 PPR repeat
XP_057808073.1 Pfam PF01535 PPR Repeat 226 250 1.1e-96 311.3 PPR repeat
XP_057808073.1 Pfam PF12854 PPR_1 Repeat 256 287 3.8e-126 411.2 PPR repeat
XP_057808073.1 Pfam PF13041 PPR_2 Repeat 258 306 5.8e-157 510.5 PPR repeat family
XP_057808073.1 Pfam PF01535 PPR Repeat 261 289 1.1e-96 311.3 PPR repeat
XP_057808073.1 Pfam PF13812 PPR_3 Repeat 284 340 1.2e-69 231.0 Pentatricopeptide repeat domain
XP_057808073.1 Pfam PF12854 PPR_1 Repeat 292 322 3.8e-126 411.2 PPR repeat
XP_057808073.1 Pfam PF01535 PPR Repeat 296 325 1.1e-96 311.3 PPR repeat
XP_057808073.1 Pfam PF12854 PPR_1 Repeat 326 356 3.8e-126 411.2 PPR repeat
XP_057808073.1 Pfam PF13041 PPR_2 Repeat 328 361 5.8e-157 510.5 PPR repeat family
XP_057808073.1 Pfam PF01535 PPR Repeat 331 360 1.1e-96 311.3 PPR repeat
XP_057808073.1 Pfam PF13041 PPR_2 Repeat 362 410 5.8e-157 510.5 PPR repeat family
XP_057808073.1 Pfam PF01535 PPR Repeat 366 395 1.1e-96 311.3 PPR repeat
XP_057808073.1 Pfam PF13812 PPR_3 Repeat 425 481 1.2e-69 231.0 Pentatricopeptide repeat domain
XP_057808073.1 Pfam PF12854 PPR_1 Repeat 428 461 3.8e-126 411.2 PPR repeat
XP_057808073.1 Pfam PF13041 PPR_2 Repeat 433 480 5.8e-157 510.5 PPR repeat family
XP_057808073.1 Pfam PF01535 PPR Repeat 436 464 1.1e-96 311.3 PPR repeat
XP_057808073.1 Pfam PF23276 TPR_24 Repeat 447 562 2.5e-30 105.8 Pentatricopeptide repeat-containing protein
XP_057808073.1 Pfam PF13041 PPR_2 Repeat 467 516 5.8e-157 510.5 PPR repeat family
XP_057808073.1 Pfam PF01535 PPR Repeat 471 499 1.1e-96 311.3 PPR repeat
XP_057808073.1 Pfam PF13812 PPR_3 Repeat 472 512 1.2e-69 231.0 Pentatricopeptide repeat domain
XP_057808073.1 Pfam PF13812 PPR_3 Repeat 491 547 1.2e-69 231.0 Pentatricopeptide repeat domain
XP_057808073.1 Pfam PF12854 PPR_1 Repeat 498 530 3.8e-126 411.2 PPR repeat
XP_057808073.1 Pfam PF13041 PPR_2 Repeat 502 550 5.8e-157 510.5 PPR repeat family
XP_057808073.1 Pfam PF01535 PPR Repeat 505 534 1.1e-96 311.3 PPR repeat
XP_057808073.1 Pfam PF13812 PPR_3 Repeat 567 617 1.2e-69 231.0 Pentatricopeptide repeat domain
XP_057808073.1 Pfam PF12854 PPR_1 Repeat 568 596 3.8e-126 411.2 PPR repeat
XP_057808073.1 Pfam PF13041 PPR_2 Repeat 572 621 5.8e-157 510.5 PPR repeat family
XP_057808073.1 Pfam PF01535 PPR Repeat 577 605 1.1e-96 311.3 PPR repeat
XP_057808073.1 Pfam PF13812 PPR_3 Repeat 598 652 1.2e-69 231.0 Pentatricopeptide repeat domain
XP_057808073.1 Pfam PF13041 PPR_2 Repeat 607 655 5.8e-157 510.5 PPR repeat family
XP_057808073.1 Pfam PF01535 PPR Repeat 610 640 1.1e-96 311.3 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057952089.1
TTGTTTCTCTCATGGAGATGGCACACTTGCCCCAACACCTGACCCCCAAACGCCTCCTACATCTCCTCAAGTCGGAGAAGAATCTCAGCTCCGCACTCAGCCTGTTCAACTCAGCGAGTAGCCACCCTAATTACGCACACACCCCTGCCGTCTTCCACCACATCCTCCGCCGCCTCTCCGCCTCCAAGGACCCCAAACTCCTCCCCAACATCACCCGCATCGTCGACCTCATTCGCCTCCAGAAATGCCCTTGCAACGAA...
XM_057952090.1
TTGTTTCTCTCATGGAGATGGCACACTTGCCCCAACACCTGACCCCCAAACGCCTCCTACATCTCCTCAAGTCGGAGAAGAATCTCAGCTCCGCACTCAGCCTGTTCAACTCAGCGAGTAGCCACCCTAATTACGCACACACCCCTGCCGTCTTCCACCACATCCTCCGCCGCCTCTCCGCCTCCAAGGACCCCAAACTCCTCCCCAACATCACCCGCATCGTCGACCTCATTCGCCTCCAGAAATGCCCTTGCAACGAA...

CDS

2 records

下载 CDS FASTA
LOC131022580
ATGGAGATGGCACACTTGCCCCAACACCTGACCCCCAAACGCCTCCTACATCTCCTCAAGTCGGAGAAGAATCTCAGCTCCGCACTCAGCCTGTTCAACTCAGCGAGTAGCCACCCTAATTACGCACACACCCCTGCCGTCTTCCACCACATCCTCCGCCGCCTCTCCGCCTCCAAGGACCCCAAACTCCTCCCCAACATCACCCGCATCGTCGACCTCATTCGCCTCCAGAAATGCCCTTGCAACGAAGACACTGCGCT...
LOC131022580
ATGGAGATGGCACACTTGCCCCAACACCTGACCCCCAAACGCCTCCTACATCTCCTCAAGTCGGAGAAGAATCTCAGCTCCGCACTCAGCCTGTTCAACTCAGCGAGTAGCCACCCTAATTACGCACACACCCCTGCCGTCTTCCACCACATCCTCCGCCGCCTCTCCGCCTCCAAGGACCCCAAACTCCTCCCCAACATCACCCGCATCGTCGACCTCATTCGCCTCCAGAAATGCCCTTGCAACGAAGACACTGCGCT...

Protein

2 records

下载 Protein FASTA
XP_057808072.1
MEMAHLPQHLTPKRLLHLLKSEKNLSSALSLFNSASSHPNYAHTPAVFHHILRRLSASKDPKLLPNITRIVDLIRLQKCPCNEDTALAVLKIYSRNQMLERAVEVFEKMKEVFGCEPGVRSYNSLMNAFVASNQLSKAELFLRNFRVMSVSPNLETFNILLKIACRKREFDKARELINVMWERDLVPDVYSYGTLINGLAKSGDVHEALKVFDEMLERGLKPDVMCYNILIDGFLKKGDYDAYKGIWERLTKDSCVYPSV...
XP_057808073.1
MEMAHLPQHLTPKRLLHLLKSEKNLSSALSLFNSASSHPNYAHTPAVFHHILRRLSASKDPKLLPNITRIVDLIRLQKCPCNEDTALAVLKIYSRNQMLERAVEVFEKMKEVFGCEPGVRSYNSLMNAFVASNQLSKAELFLRNFRVMSVSPNLETFNILLKIACRKREFDKARELINVMWERDLVPDVYSYGTLINGLAKSGDVHEALKVFDEMLERGLKPDVMCYNILIDGFLKKGDYDAYKGIWERLTKDSCVYPSV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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