Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000733`

染色体: Chr04 坐标: 8728890-8732796 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000733`
名称	SmilChr04G000733
描述	sulfoquinovosyl transferase SQD2-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	8728890 - 8732796 / `-`

ID 对照

NCBI Gene ID	`LOC131022588`
GeneID	`131022588`
locus_tag	`-`
NCBI Name	`LOC131022588`
原始查询	`SmilChr04G000733`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	sulfoquinovosyl transferase SQD2-like
产物	sulfoquinovosyl transferase SQD2-like
Arabidopsis	`AT5G01220` (SQD2) sulfoquinovosyldiacylglycerol 2 [Source:NCBI gene (formerly Entrezgene);Acc:831888] identity=72.4; qcov=0.944; evalue=0; confidence=high
Rice	`Os07g0100300` (SQD2.1) - identity=78.6; qcov=0.819; evalue=0; confidence=high
GO	GO:0009247 (glycolipid biosynthetic process); GO:0009941 (chloroplast envelope); GO:0046506 (sulfolipid biosynthetic process); GO:0046510 (UDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity)
KEGG	smil00561 (Glycerolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00566 (Sulfoquinovose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00534 (Glycos_transf_1); PF13439 (Glyco_transf_4); PF13524 (Glyco_trans_1_2); PF13579 (Glyco_trans_4_4); PF13692 (Glyco_trans_1_4); PF20706 (GT4-conflict)
InterPro	-
eggNOG	-
NR	GeneID:131022588

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057808084.1`
2	Chloroplast stroma	叶绿体基质	0.60000	`XP_057808084.1`
3	Chloroplast membrane	叶绿体膜	0.40000	`XP_057808084.1`
4	Nucleus	细胞核	0.00000	`XP_057808084.1`
5	Chromosome	染色体	0.00000	`XP_057808084.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:8729140`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C35
`Chr4:8729194`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B84,D11
`Chr4:8729213`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B33,B44
`Chr4:8729316`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B84,D11
`Chr4:8729437`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr4:8729588`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	D7,D8
`Chr4:8729595`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr4:8730127`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A2,A8,B94
`Chr4:8730128`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr4:8730162`	`C`	`CT`	1bp_insertion	frameshift_variant	2	C20,C40
`Chr4:8730162`	`C`	`CT`	1bp_insertion	CDS_variant	2	C20,C40
`Chr4:8730545`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B33,B44

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057808084.1

502 aa

251

502

Glyco_trans_4_4

Glyco_transf_4

Glycos_transf_1

Glyco_trans_1_4

Glyco_trans_1_2

GT4-conflict

PF13579 Glyco_trans_4_4 111-263 aa PF13439 Glyco_transf_4 113-277 aa PF00534 Glycos_transf_1 297-448 aa PF13692 Glyco_trans_1_4 299-436 aa PF13524 Glyco_trans_1_2 316-456 aa PF20706 GT4-conflict 359-461 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057808084.1`	Pfam	`PF13579`	Glyco_trans_4_4	Domain	111	263	4.6e-18	66.8	Glycosyl transferase 4-like domain
`XP_057808084.1`	Pfam	`PF13439`	Glyco_transf_4	Domain	113	277	6.7e-28	98.5	Glycosyltransferase Family 4
`XP_057808084.1`	Pfam	`PF00534`	Glycos_transf_1	Domain	297	448	3.3e-27	95.8	Glycosyl transferases group 1
`XP_057808084.1`	Pfam	`PF13692`	Glyco_trans_1_4	Domain	299	436	9.8e-29	101.2	Glycosyl transferases group 1
`XP_057808084.1`	Pfam	`PF13524`	Glyco_trans_1_2	Domain	316	456	4.3e-09	37.2	Glycosyl transferase-like
`XP_057808084.1`	Pfam	`PF20706`	GT4-conflict	Family	359	461	4.5e-07	29.9	Family 4 Glycosyltransferase in conflict systems

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057952101.1
GGTTTATTCCAGTTATACTGTGATTGTAATTGGAGGCAGAGCATATGCTCTCTCTGCTCCCAATTATTCTTCCTCATACAGAATATCCAATTGGAAAGTCCCTCCCATGGCCCCTCTTCTTCTCTTTCTACTTTCTCTCACGTCACTCCCATTAATCTATTCCAATTTCAAGCCCCAAAAGAATCAAGAAAATCCAATAACCTTCAAAGCTTTCTTCCAAGCCACCAACAATTTTTTCTGCACAGTTGTCACATGTATTA...

CDS

1 records

下载 CDS FASTA

LOC131022588
ATGTGCAGACTTTCTCTCTCTATAAATCCCGCTCTCTCTCCTCCACTTGCTTCATCATCGTCTCCACATAGACTTTCCTGCTCTTCTGCTTCGCGAATCTGTGTAAAGGCTGAATCTTTGAGCAATCGACAACTGGGAATCTCGACAGGTCGATCCCCTAGAGGGAGAAACTCGAACTCTGCTTCAGTTAGCTGTAGCGGCGACATGACTATTCGAGAATTCATAGATGGGAAAGAGGAAAACTCTCCTCCTCTGTTTGA...

Protein

1 records

下载 Protein FASTA

XP_057808084.1
MCRLSLSINPALSPPLASSSSPHRLSCSSASRICVKAESLSNRQLGISTGRSPRGRNSNSASVSCSGDMTIREFIDGKEENSPPLFEAEVNAKPRRIALFVEPSPFAYISGYKNRFQNFIKYLREMGDEVMVVTTHEGVPEEFHGAQLIGSRSFPFPWYQNVPLSLALSPRIISAVSQFKPDIIHASSPGIMVFGALAIAKLLSVPLVMSYHTHVPVYIPRYTFSWLVQPMWLVIKCLHRAADLTLVPSAAIAKDLVEAR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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