当前解析结果
SmilChr04G000760| 统一新 Gene ID | SmilChr04G000760 |
|---|---|
| 名称 | SmilChr04G000760 |
| 描述 | protein ENDOPLASMIC RETICULUM-ARRESTED PEN3 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 9258738 - 9262678 / - |
| NCBI Gene ID | LOC131022614 |
|---|---|
| GeneID | 131022614 |
| locus_tag | - |
| NCBI Name | LOC131022614 |
| 原始查询 | SmilChr04G000760 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein ENDOPLASMIC RETICULUM-ARRESTED PEN3 |
| 产物 | protein ENDOPLASMIC RETICULUM-ARRESTED PEN3 |
| Arabidopsis | AT3G09030 (AT3G09030)BTB/POZ domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:820055] identity=57.6; qcov=0.981; evalue=0; confidence=high |
| Rice | Os03g0264700 (OJ1012B02.6)- identity=42.6; qcov=1.04; evalue=4.25e-114; confidence=medium |
| GO | GO:0005515 (protein binding); GO:0051260 (protein homooligomerization) |
| KEGG | - |
| Pfam | PF02214 (BTB_2); PF25279 (Beta_prop_At2g24240) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022614 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.60000 | XP_057808102.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057808102.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057808102.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057808102.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057808102.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:9261054 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C2,C69,C84 |
Chr4:9261120 |
CCT |
C |
2bp_deletion | frameshift_variant | 1 | C71 |
Chr4:9261120 |
CCT |
C |
2bp_deletion | CDS_variant | 1 | C71 |
Chr4:9261388 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | C11,C2,C69,C84,D11 |
Chr4:9261499 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | C11,C2,C69,C84 |
Chr4:9261538 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B26 |
Chr4:9261698 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr4:9261937 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B124,B79,C85 |
Chr4:9262063 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B102,B99 |
Chr4:9262115 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B9,C54 |
Chr4:9262124 |
GCT |
G |
2bp_deletion | frameshift_variant | 1 | D4 |
Chr4:9262124 |
GCT |
G |
2bp_deletion | CDS_variant | 1 | D4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057808102.1PF02214
BTB_2 18-100 aa
PF25279
Beta_prop_At2g24240 137-460 aa
XP_057808103.1PF02214
BTB_2 18-100 aa
PF25279
Beta_prop_At2g24240 137-460 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808102.1 |
Pfam | PF02214 |
BTB_2 | Domain | 18 | 100 | 1e-10 | 42.5 | BTB/POZ domain |
XP_057808102.1 |
Pfam | PF25279 |
Beta_prop_At2g24240 | Repeat | 137 | 460 | 1.4e-13 | 51.2 | At2g24240-like, C-terminal beta propeller |
XP_057808103.1 |
Pfam | PF02214 |
BTB_2 | Domain | 18 | 100 | 1e-10 | 42.5 | BTB/POZ domain |
XP_057808103.1 |
Pfam | PF25279 |
Beta_prop_At2g24240 | Repeat | 137 | 460 | 1.4e-13 | 51.2 | At2g24240-like, C-terminal beta propeller |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。