当前解析结果
SmilChr04G000765| 统一新 Gene ID | SmilChr04G000765 |
|---|---|
| 名称 | SmilChr04G000765 |
| 描述 | glycerol-3-phosphate 2-O-acyltransferase 6-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 9315101 - 9318042 / - |
| NCBI Gene ID | LOC131022618 |
|---|---|
| GeneID | 131022618 |
| locus_tag | - |
| NCBI Name | LOC131022618 |
| 原始查询 | SmilChr04G000765 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glycerol-3-phosphate 2-O-acyltransferase 6-like |
| 产物 | glycerol-3-phosphate 2-O-acyltransferase 6-like |
| Arabidopsis | AT2G38110 (GPAT6)glycerol-3-phosphate acyltransferase 6 [Source:NCBI gene (formerly Entrezgene);Acc:818389] identity=77.3; qcov=0.986; evalue=0; confidence=high |
| Rice | Os01g0855000 (GPAT)- identity=74.5; qcov=0.988; evalue=0; confidence=high |
| GO | GO:0010143 (cutin biosynthetic process); GO:0016020 (membrane); GO:0016791 (phosphatase activity); GO:0090447 (glycerol-3-phosphate 2-O-acyltransferase activity) |
| KEGG | smil00561 (Glycerolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01553 (Acyltransferase); PF12710 (HAD); PF23270 (HAD_RAM2_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022618 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057808109.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.80000 | XP_057808109.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057808109.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057808109.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057808109.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:9315308 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A3,B6,B69,C41,C67 |
Chr4:9315329 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr4:9315391 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B131,B57,C27,C55 |
Chr4:9315431 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,D10 |
Chr4:9315750 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B9,C54 |
Chr4:9315857 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | C57,C64,C66,D10 |
Chr4:9315878 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B124,B79 |
Chr4:9315908 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B124,B79 |
Chr4:9315917 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A20,C19,C54 |
Chr4:9315947 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A16,B83,C59 |
Chr4:9316061 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr4:9316102 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057808109.1PF23270
HAD_RAM2_N 22-211 aa
PF12710
HAD 24-202 aa
PF01553
Acyltransferase 298-399 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808109.1 |
Pfam | PF23270 |
HAD_RAM2_N | Domain | 22 | 211 | 2.5e-67 | 226.9 | Glycerol-3-phosphate acyltransferase RAM2-like, HAD-like domain |
XP_057808109.1 |
Pfam | PF12710 |
HAD | Family | 24 | 202 | 4.2e-23 | 83.5 | haloacid dehalogenase-like hydrolase |
XP_057808109.1 |
Pfam | PF01553 |
Acyltransferase | Family | 298 | 399 | 1.1e-08 | 35.7 | Acyltransferase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。