Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000776`

染色体: Chr04 坐标: 9498171-9512379 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000776`
名称	SmilChr04G000776
描述	uncharacterized protein At4g19900-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	9498171 - 9512379 / `-`

ID 对照

NCBI Gene ID	`LOC131022624`
GeneID	`131022624`
locus_tag	`-`
NCBI Name	`LOC131022624`
原始查询	`SmilChr04G000776`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alpha 1,4-glycosyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831833]; symbol=AT5G01250; hit=AT5G01250; species=arabidopsis; confidence=medium
产物	alpha 1,4-glycosyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831833]; symbol=AT5G01250; hit=AT5G01250; species=arabidopsis; confidence=medium
Arabidopsis	`AT5G01250` (AT5G01250) alpha 1,4-glycosyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831833] identity=44.3; qcov=0.949; evalue=6.28e-95; confidence=medium
Rice	`Os04g0529700` - identity=47.3; qcov=0.825; evalue=2.19e-75; confidence=high
GO	-
KEGG	smil00601 (Glycosphingolipid biosynthesis - lacto and neolacto series - Salvia miltiorrhiza (redroot sage)); smil00603 (Glycosphingolipid biosynthesis - globo and isoglobo series - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF04488 (Gly_transf_sug); PF04572 (Gb3_synth)
InterPro	-
eggNOG	-
NR	GeneID:131022624

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057808111.1`
2	Nucleus	细胞核	0.00000	`XP_057808111.1`
3	Chromosome	染色体	0.00000	`XP_057808111.1`
4	Centromere	着丝粒	0.00000	`XP_057808111.1`
5	Chromatin	染色质	0.00000	`XP_057808111.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:9511225`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:9511237`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B22
`Chr4:9511237`	`TC`	`T`	1bp_deletion	CDS_variant	1	B22
`Chr4:9511242`	`GA`	`G`	1bp_deletion	frameshift_variant	1	C10
`Chr4:9511242`	`GA`	`G`	1bp_deletion	CDS_variant	1	C10
`Chr4:9511265`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr4:9511268`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B38,B39,C13
`Chr4:9511274`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C39,C75
`Chr4:9511325`	`CA`	`C`	1bp_deletion	frameshift_variant	12	B120,B13,B139,B17,B52,B57,B62,B63,B64,C1,C59,C6
`Chr4:9511329`	`TA`	`T`	1bp_deletion	frameshift_variant	12	B120,B13,B139,B17,B52,B57,B62,B63,B64,C1,C59,C6
`Chr4:9511597`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C11,C69
`Chr4:9511749`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057808111.1

354 aa

177

354

Gly_transf_sug

Gb3_synth

PF04488 Gly_transf_sug 127-248 aa PF04572 Gb3_synth 265-333 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057808111.1`	Pfam	`PF04488`	Gly_transf_sug	Family	127	248	2e-21	77.2	Glycosyltransferase sugar-binding region containing DXD motif
`XP_057808111.1`	Pfam	`PF04572`	Gb3_synth	Family	265	333	1e-17	65.2	Alpha 1,4-glycosyltransferase conserved region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XR_009101366.1
AACACCAAACAACATTAAAAAAAATACAAATTCACTTCCTCTCCTTAACCTTAACCCTTCCTCTTCCCTCATCCCAATCCATCCACTTTAAAAAAACAAATTCACTCAATTTTCTACGAATCAAGAAAGCAATTCTCTGTCTCTCCTCCCCTCCTAGCTAGTGAGATAAAATGTTGGAATCTTGGAGATTCTCCCACATGAAATTCAACTTGTTCACCACCATCACCCTCGCATCGATCATCTTGGTCCTAATCTTCGCC...

XM_057952128.1
AACACCAAACAACATTAAAAAAAATACAAATTCACTTCCTCTCCTTAACCTTAACCCTTCCTCTTCCCTCATCCCAATCCATCCACTTTAAAAAAACAAATTCACTCAATTTTCTACGAATCAAGAAAGCAATTCTCTGTCTCTCCTCCCCTCCTAGCTAGTGAGATAAAATGTTGGAATCTTGGAGATTCTCCCACATGAAATTCAACTTGTTCACCACCATCACCCTCGCATCGATCATCTTGGTCCTAATCTTCGCC...

CDS

1 records

下载 CDS FASTA

LOC131022624
ATGTTGGAATCTTGGAGATTCTCCCACATGAAATTCAACTTGTTCACCACCATCACCCTCGCATCGATCATCTTGGTCCTAATCTTCGCCGACAGCATCTTCTCGAAGGTTCCAATCCAGTTCGAGAATCTCAGCGATCATCCCAATCTGCTGCAGACTCATCAAGCTGCCAGAATGCTCAAAATCACATCAGCAGCAGGCTTCGAGAAGATTCCGCTCCGGCCCGAACGGAATCTCCTCAAGCCCGAGGAGCTGAGAAT...

Protein

1 records

下载 Protein FASTA

XP_057808111.1
MLESWRFSHMKFNLFTTITLASIILVLIFADSIFSKVPIQFENLSDHPNLLQTHQAARMLKITSAAGFEKIPLRPERNLLKPEELRIFSESDPTGRFDSRVRGFLRGNQCRFQAFMTWISPLDSYGEREFSGLETLFETNPSICLIILSETMDSDKGLKILEPLLERGFRVRAMAPDLWDLIRNTPAEIWFNEIKNGIRNPGEIPLPQNLSNLIRLAVLYKYGGIYLDTDFIILKSLEGLRNSIGAQSVDLFGNWTRLNN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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