Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000779`

染色体: Chr04 坐标: 9531284-9537359 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000779`
名称	SmilChr04G000779
描述	RNA polymerase II C-terminal domain phosphatase-like 2
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	9531284 - 9537359 / `-`

ID 对照

NCBI Gene ID	`LOC131022626`
GeneID	`131022626`
locus_tag	`-`
NCBI Name	`LOC131022626`
原始查询	`SmilChr04G000779`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RNA polymerase II C-terminal domain phosphatase-like 2
产物	RNA polymerase II C-terminal domain phosphatase-like 2
Arabidopsis	`AT5G01270` (CPL2) carboxyl-terminal domain (ctd) phosphatase-like 2 [Source:NCBI gene (formerly Entrezgene);Acc:831743] identity=55.9; qcov=1.02; evalue=0; confidence=high
Rice	`Os01g0857000` (OsCPL2) - identity=65.5; qcov=0.584; evalue=0; confidence=medium
GO	GO:0008420 (RNA polymerase II CTD heptapeptide repeat phosphatase activity)
KEGG	-
Pfam	PF00035 (dsrm); PF03031 (NIF); PF28898 (SPOC_CPL1_2)
InterPro	-
eggNOG	-
NR	GeneID:131022626

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057808114.1`
2	Nucleus	细胞核	0.80000	`XP_057808114.1`
3	Cytoplasmic granule	细胞质颗粒	0.40000	`XP_057808114.1`
4	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.20000	`XP_057808114.1`
5	P-body	P-body	0.20000	`XP_057808114.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:9533914`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A5,B48
`Chr4:9534032`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C39,C75
`Chr4:9534311`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C84
`Chr4:9535614`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B124,B16,B82
`Chr4:9536215`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B15,C82
`Chr4:9536329`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C73
`Chr4:9536925`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B100,B47,B48,B60

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057808114.1

779 aa

390

779

SPOC_CPL1_2

NIF

dsrm

PF28898 SPOC_CPL1_2 5-125 aa PF03031 NIF 245-361 aa PF00035 dsrm 652-714 aa

XP_057808115.1

779 aa

390

779

SPOC_CPL1_2

NIF

dsrm

PF28898 SPOC_CPL1_2 5-125 aa PF03031 NIF 245-361 aa PF00035 dsrm 652-714 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057808114.1`	Pfam	`PF28898`	SPOC_CPL1_2	Domain	5	125	4.6e-51	172.7	CPL1/2 SPOC domain
`XP_057808114.1`	Pfam	`PF03031`	NIF	Family	245	361	6.8e-11	42.8	NLI interacting factor-like phosphatase
`XP_057808114.1`	Pfam	`PF00035`	dsrm	Domain	652	714	3.8e-08	34.5	Double-stranded RNA binding motif
`XP_057808115.1`	Pfam	`PF28898`	SPOC_CPL1_2	Domain	5	125	4.6e-51	172.7	CPL1/2 SPOC domain
`XP_057808115.1`	Pfam	`PF03031`	NIF	Family	245	361	6.8e-11	42.8	NLI interacting factor-like phosphatase
`XP_057808115.1`	Pfam	`PF00035`	dsrm	Domain	652	714	3.8e-08	34.5	Double-stranded RNA binding motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057952131.1
GCTTGTTGAGGAGGGAGTGTGAGAGAGAGTCTCTAGAGAGAGAAAAAAGGTAGTTTTAGTGTAGAGAGAGGAGAGAGAGGGAAGAGAGCAAAATCATGCAGGGTGGGAGGAATTTTACCCAGAATTAATATTTTTTTGTAAAATTGTTGTTGTTGCTTTCGGAATTGGCACAATTCGCGCTTGTTTTTTTGGCAGAAAATAATGAGTCGATTAGGGTTTAAATCAGTGGTTTATCATGGAGATGTGTATCTAGGGGAGCT...

XM_057952132.1
TGAGGAGGGAGTGTGAGAGAGAGTCTCTAGAGAGAGAAAAAAGGTAGTTTTAGTGTAGAGAGAGGAGAGAGAGGGAAGAGAGCAAAATCATGCAGGGTGGGAGGAATTTTACCCAGAATTAATATTTTTTTGTAAAATTGTTGTTGTTGCTTTCGGAATTGGCACAATTCGCGCTTGTTTTTTTGGCAGAAAATAATGAGTCGATTAGGGTTTAAATCAGTGGTTTATCATGGAGATGTGTATCTAGGGGAGCTGGAAGC...

CDS

2 records

下载 CDS FASTA

LOC131022626
ATGAGTCGATTAGGGTTTAAATCAGTGGTTTATCATGGAGATGTGTATCTAGGGGAGCTGGAAGCAGTTCCAGTGAAGGTTGGGAATTTCCAGTTCCCCAATAATGAGATTCGAATTCATCACATCTCGCATAACAGCGAGAGATGCCATCCCCTCTCTGTTTTGCAGACGATTTCATATGGCTCTGTTGTATGCAAACTCGAGCCCTGCTCTAATGGCAATATAAATCCCAACGAGCAGTCTCCGTTGATCAATCTCCA...

Protein

2 records

下载 Protein FASTA

XP_057808114.1
MSRLGFKSVVYHGDVYLGELEAVPVKVGNFQFPNNEIRIHHISHNSERCHPLSVLQTISYGSVVCKLEPCSNGNINPNEQSPLINLHASCFYELKTAVVLLGTEEIHLVAMPSKQKKFPCFWCYSVPCGLYNACLWMLNTRCLAIVFDLDETLIVANTMKSFEDRIEALVGWIARESDPIRESGMTAEMKRYVEDRALLKQYAETDSVVDGGKAYKMQHEEVPLLSDGVHRVVRPVVRLPEKNIVLTRINPENRDTSVLV...

XP_057808115.1
MSRLGFKSVVYHGDVYLGELEAVPVKVGNFQFPNNEIRIHHISHNSERCHPLSVLQTISYGSVVCKLEPCSNGNINPNEQSPLINLHASCFYELKTAVVLLGTEEIHLVAMPSKQKKFPCFWCYSVPCGLYNACLWMLNTRCLAIVFDLDETLIVANTMKSFEDRIEALVGWIARESDPIRESGMTAEMKRYVEDRALLKQYAETDSVVDGGKAYKMQHEEVPLLSDGVHRVVRPVVRLPEKNIVLTRINPENRDTSVLV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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