Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000782`

染色体: Chr04 坐标: 9584641-9587431 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000782`
名称	SmilChr04G000782
描述	cold-responsive protein kinase 1
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	9584641 - 9587431 / `-`

ID 对照

NCBI Gene ID	`LOC131022628`
GeneID	`131022628`
locus_tag	`-`
NCBI Name	`LOC131022628`
原始查询	`SmilChr04G000782`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cold-responsive protein kinase 1
产物	cold-responsive protein kinase 1
Arabidopsis	`AT3G09010` (AT3G09010) Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820053] identity=71.1; qcov=0.887; evalue=2.5e-153; confidence=high
Rice	`Os03g0264300` (OsRLCK106) - identity=60.5; qcov=1.01; evalue=2.35e-135; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0019752 (carboxylic acid metabolic process); GO:0046912 (acyltransferase activity, acyl groups converted into alkyl on transfer)
KEGG	-
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:131022628

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057808116.1`
2	Cytosol	细胞质基质	0.40000	`XP_057808117.1`
3	Nucleus	细胞核	0.00000	`XP_057808116.1`
4	Chromosome	染色体	0.00000	`XP_057808116.1`
5	Centromere	着丝粒	0.00000	`XP_057808116.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:9585034`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B15,C82,C9
`Chr4:9585208`	`GAC`	`G`	2bp_deletion	frameshift_variant	2	B101,B15
`Chr4:9585208`	`GAC`	`G`	2bp_deletion	CDS_variant	2	B101,B15
`Chr4:9585267`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B15,C82,C9
`Chr4:9585841`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B126,B133,B55,C17
`Chr4:9585907`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B124,B16,B82
`Chr4:9586208`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B66,C79
`Chr4:9587029`	`G`	`A`	EMS_canonical_SNV	stop_gained	177	A1,A10,A13,A15,A18,A19,A22,A23,A24,A25,A3,A4,A5,A6,A7,A8,B1,B10,B100,B101,B103,B106,B107,B108,B109,B11,B110,B112,B113,B114,B117,B118,B119,B120,B121,B122,B123,B124,B125,B129,B13,B131,B134,B135,B136,B137,B138,B139,B14,B140,B15,B19,B2,B20,B21,B22,B23,B25,B26,B27,B28,B29,B3,B31,B34,B35,B36,B37,B4,B40,B42,B43,B44,B46,B47,B48,B49,B54,B56,B57,B59,B6,B60,B62,B65,B66,B68,B69,B71,B72,B73,B74,B76,B77,B79,B8,B80,B83,B85,B86,B87,B88,B89,B90,B91,B92,B93,B95,B96,B97,B98,B99,C10,C11,C12,C15,C18,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C32,C33,C34,C35,C37,C38,C39,C40,C41,C42,C43,C44,C46,C47,C49,C5,C51,C52,C55,C56,C62,C67,C68,C69,C7,C70,C71,C72,C73,C75,C76,C77,C79,C8,C80,C81,C82,C83,C85,C86,C87,D1,D11,D2,D4,D5,D6,D7,D8,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057808116.1

376 aa

188

376

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 45-254 aa PF07714 PK_Tyr_Ser-Thr 47-314 aa

XP_057808117.1

324 aa

162

324

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 12-203 aa PF07714 PK_Tyr_Ser-Thr 13-262 aa

XP_057808118.1

320 aa

160

320

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 8-199 aa PF07714 PK_Tyr_Ser-Thr 9-258 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057808116.1`	Pfam	`PF00069`	Pkinase	Domain	45	254	3.4e-44	151.9	Protein kinase domain
`XP_057808116.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	47	314	2.1e-47	162.3	Protein tyrosine and serine/threonine kinase
`XP_057808117.1`	Pfam	`PF00069`	Pkinase	Domain	12	203	5.5e-38	131.6	Protein kinase domain
`XP_057808117.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	13	262	2.3e-42	145.8	Protein tyrosine and serine/threonine kinase
`XP_057808118.1`	Pfam	`PF00069`	Pkinase	Domain	8	199	5.3e-38	131.6	Protein kinase domain
`XP_057808118.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	9	258	2e-42	146.0	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057952133.1
TTTTAGTATAAATGAAACTGCACATATTTACGTTCACGGCTCCTGAGAGTACAATTGCCGCGGGAACACCACCTTCATTTCGCTTTTCCCTCTCTCTCTCTCTTCATTGTCAAACTCCGCCTCAGTGGGAGATACTGCTATTAATGATCCACCTAAACCACACGCAATCGTGATAACACTATTTTGTTTATTTAATTCTTTCTGTTTGGTATAACACCACCTAACGATAGCATCTCACCTCTTCTCTTTAATTTTTACCC...

XM_057952134.1
CTGAGAGTACAATTGCCGCGGGAACACCACCTTCATTTCGCTTTTCCCTCTCTCTCTCTCTTCATTGTCAAACTCCGCCTCAGTGGGAGATACTGCTATTAATGATCCACCTAAACCACACGCAATCGTGATAACACTATTTTGTTTATTTAATTCTTTCTGTTTGGTATAACACCACCTAACGATAGCATCTCACCTCTTCTCTTTAATTTTTACCCTTTTCGTCTGCGATGCTTTAGCTTAATCTTTTCCGCTCTCTG...

CDS

3 records

下载 CDS FASTA

LOC131022628
ATGGGCCTTTCTGATTGTTTTGGTGCATTTGATTCCTGCAGAGATGACACACCAACAGAAGAACAAGAAATCCCTACAAACAACGTGAGGCTATTCTCGTATCATACTCTGCGTTCAGCGACGAGGCTGTTTCACCCTTCCAACAGAATCGGCAGAGGTGGTTTCGGAGTAGTCTATAAAGGTGTTTTGAGAGATGGAACTCAAGTTGCAATCAAGGCACTCTCTGCTGGATCCAAGCAGGGGATAAAGGAGTTCTTGAC...

LOC131022628
ATGACACACCAACAGAAGAACAAGGGTGTTTTGAGAGATGGAACTCAAGTTGCAATCAAGGCACTCTCTGCTGGATCCAAGCAGGGGATAAAGGAGTTCTTGACAGAACTCGGCACGATATCGAAGATCCAACACCCTAACCTCGTACAGCTGATCGGCTGCTGCGTCGAGGGCGACCACAGAATACTCGTCTACGAGTACATGGAGAACAACAGCCTCCACAGCGCCTTGCTAGGCTCTTCCAGTAAACGGGTCGGGCT...

Protein

3 records

下载 Protein FASTA

XP_057808116.1
MGLSDCFGAFDSCRDDTPTEEQEIPTNNVRLFSYHTLRSATRLFHPSNRIGRGGFGVVYKGVLRDGTQVAIKALSAGSKQGIKEFLTELGTISKIQHPNLVQLIGCCVEGDHRILVYEYMENNSLHSALLGSSSKRVGLDWSRRAAICLGTAEGLAFLHEDAEPGIVHRDIKASNVLLDEDFCPKIGDFGLAKLFPDNVTHVSTRVAGTVGYLAPEYALLGQLTKKADVYSFGVLVLEIASGRSSSKAAFGEEFYVLLEW...

XP_057808117.1
MTHQQKNKGVLRDGTQVAIKALSAGSKQGIKEFLTELGTISKIQHPNLVQLIGCCVEGDHRILVYEYMENNSLHSALLGSSSKRVGLDWSRRAAICLGTAEGLAFLHEDAEPGIVHRDIKASNVLLDEDFCPKIGDFGLAKLFPDNVTHVSTRVAGTVGYLAPEYALLGQLTKKADVYSFGVLVLEIASGRSSSKAAFGEEFYVLLEWTWKLFQEGRLLDVVDPDLADYAEDQITRFMKVALFCTQAASQQRPDMKQVVK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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