当前解析结果
SmilChr04G000783| 统一新 Gene ID | SmilChr04G000783 |
|---|---|
| 名称 | SmilChr04G000783 |
| 描述 | endochitinase A-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 9595001 - 9598038 / - |
| NCBI Gene ID | LOC131022631 |
|---|---|
| GeneID | 131022631 |
| locus_tag | - |
| NCBI Name | LOC131022631 |
| 原始查询 | SmilChr04G000783 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | endochitinase A-like |
| 产物 | endochitinase A-like |
| Arabidopsis | AT2G40070 (AT2G40070)flocculation FLO11-like protein [Source:NCBI gene (formerly Entrezgene);Acc:818595] identity=35.2; qcov=1.07; evalue=9.07e-47; confidence=medium |
| Rice | Os01g0141900- identity=35.9; qcov=1.14; evalue=8.37e-56; confidence=medium |
| GO | GO:0043622 (cortical microtubule organization); GO:0055028 (cortical microtubule) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022631 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057808120.1 |
| 2 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057808120.1 |
| 3 | Nucleus membrane | 核膜 | 0.20000 | XP_057808120.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057808120.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057808120.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:9595315 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B124,B16,B82 |
Chr4:9595365 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B125,B90,B92,C87 |
Chr4:9595413 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr4:9595440 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr4:9595441 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr4:9595652 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B7 |
Chr4:9595668 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr4:9595742 |
TCG |
T |
2bp_deletion | frameshift_variant | 1 | B8 |
Chr4:9595742 |
TCG |
T |
2bp_deletion | CDS_variant | 1 | B8 |
Chr4:9595817 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C39,C75 |
Chr4:9595852 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C35 |
Chr4:9596126 |
TC |
T |
1bp_deletion | frameshift_variant | 2 | B129,C26 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。