当前解析结果
SmilChr04G000788| 统一新 Gene ID | SmilChr04G000788 |
|---|---|
| 名称 | SmilChr04G000788 |
| 描述 | thylakoid ADP,ATP carrier protein, chloroplastic |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 9684923 - 9688585 / - |
| NCBI Gene ID | LOC131022636 |
|---|---|
| GeneID | 131022636 |
| locus_tag | - |
| NCBI Name | LOC131022636 |
| 原始查询 | SmilChr04G000788 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | thylakoid ADP,ATP carrier protein, chloroplastic |
| 产物 | thylakoid ADP%2CATP carrier protein%2C chloroplastic |
| Arabidopsis | AT3G51870 (AT3G51870)Mitochondrial substrate carrier family protein [Source:NCBI gene (formerly Entrezgene);Acc:824350] identity=69.3; qcov=1.02; evalue=0; confidence=high |
| Rice | Os01g0265200 (OsPAPST1)- identity=75.2; qcov=0.82; evalue=1.46e-167; confidence=high |
| GO | GO:0005347 (ATP transmembrane transporter activity); GO:0042651 (thylakoid membrane); GO:0055085 (transmembrane transport) |
| KEGG | - |
| Pfam | PF00153 (Mito_carr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022636 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057808129.1 |
| 2 | Mitochondrion membrane | 线粒体膜 | 0.80000 | XP_057808129.1 |
| 3 | Mitochondrion inner membrane | 线粒体内膜 | 0.80000 | XP_057808129.1 |
| 4 | Chloroplast | 叶绿体 | 0.20000 | XP_057808129.1 |
| 5 | Chloroplast membrane | 叶绿体膜 | 0.20000 | XP_057808129.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:9686157 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B129 |
Chr4:9686190 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C35 |
Chr4:9686196 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B120 |
Chr4:9686428 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr4:9687209 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A5,B48 |
Chr4:9687215 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B119,B84 |
Chr4:9688212 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B131,B14,B34 |
Chr4:9688409 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A6,B74,C28 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057808129.1PF00153
Mito_carr 80-172 aa
PF00153
Mito_carr 175-263 aa
PF00153
Mito_carr 271-351 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808129.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 80 | 172 | 1.1e-71 | 237.3 | Mitochondrial carrier protein |
XP_057808129.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 175 | 263 | 1.1e-71 | 237.3 | Mitochondrial carrier protein |
XP_057808129.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 271 | 351 | 1.1e-71 | 237.3 | Mitochondrial carrier protein |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。