Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000794`

染色体: Chr04 坐标: 9813583-9816042 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000794`
名称	SmilChr04G000794
描述	F-box/LRR-repeat protein At3g26922-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	9813583 - 9816042 / `+`

ID 对照

NCBI Gene ID	`LOC131022642`
GeneID	`131022642`
locus_tag	`-`
NCBI Name	`LOC131022642`
原始查询	`SmilChr04G000794`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/LRR-repeat protein At3g26922-like
产物	F-box/LRR-repeat protein At3g26922-like
Arabidopsis	`AT4G26340` (AT4G26340) F-box/RNI-like/FBD-like domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:828740] identity=27.7; qcov=0.9; evalue=1.96e-23; confidence=low
Rice	`Os06g0161300` (OsFbox297) - identity=24.4; qcov=0.924; evalue=1.79e-17; confidence=weak
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF08387 (FBD); PF23622 (LRR_At1g61320_AtMIF1); PF24758 (LRR_At5g56370)
InterPro	-
eggNOG	-
NR	GeneID:131022642

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057808135.1`
2	Chromosome	染色体	0.00000	`XP_057808135.1`
3	Centromere	着丝粒	0.00000	`XP_057808135.1`
4	Chromatin	染色质	0.00000	`XP_057808135.1`
5	Telomere	端粒	0.00000	`XP_057808135.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:9813932`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B132,B140,B18,B22,C27
`Chr4:9813938`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B132,B22,B3,C27
`Chr4:9814155`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B22,C39
`Chr4:9814163`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B22,C39
`Chr4:9814174`	`AT`	`A`	1bp_deletion	frameshift_variant	19	A23,A3,B112,B127,B128,B132,B18,B22,B24,B3,B30,B37,B51,B52,B69,C21,C27,C36,C65
`Chr4:9814200`	`C`	`CAT`	2bp_insertion	frameshift_variant	7	B109,B122,B139,B23,C16,C39,C80
`Chr4:9814203`	`TGG`	`T`	2bp_deletion	frameshift_variant	4	B139,C16,C39,C80
`Chr4:9814203`	`TGG`	`T`	2bp_deletion	CDS_variant	4	B139,C16,C39,C80
`Chr4:9814231`	`GA`	`G`	1bp_deletion	frameshift_variant	12	B104,B29,B34,B5,B73,B81,C18,C24,C27,C52,C70,C71
`Chr4:9814236`	`T`	`TC`	1bp_insertion	frameshift_variant	12	B104,B29,B34,B5,B73,B81,C18,C24,C27,C52,C70,C71
`Chr4:9814300`	`T`	`TA`	1bp_insertion	frameshift_variant	6	A13,B3,B51,B74,C38,C51
`Chr4:9814319`	`C`	`CAT`	2bp_insertion	frameshift_variant	5	B13,B29,B81,C18,C70

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057808135.1

461 aa

230

461

F-box

LRR_At1g61320_AtMIF1

LRR_At5g56370

FBD

PF00646 F-box 29-67 aa PF23622 LRR_At1g61320_AtMIF1 103-420 aa PF24758 LRR_At5g56370 167-259 aa PF08387 FBD 379-414 aa

XP_057808136.1

461 aa

230

461

F-box

LRR_At1g61320_AtMIF1

LRR_At5g56370

FBD

PF00646 F-box 29-67 aa PF23622 LRR_At1g61320_AtMIF1 103-420 aa PF24758 LRR_At5g56370 167-259 aa PF08387 FBD 379-414 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057808135.1`	Pfam	`PF00646`	F-box	Domain	29	67	7.9e-07	29.5	F-box domain
`XP_057808135.1`	Pfam	`PF23622`	LRR_At1g61320_AtMIF1	Repeat	103	420	2.4e-19	70.7	At1g61320/AtMIF1, LRR domain
`XP_057808135.1`	Pfam	`PF24758`	LRR_At5g56370	Repeat	167	259	6.6e-11	43.0	FBD-associated F-box protein At5g56370, LRR repeats
`XP_057808135.1`	Pfam	`PF08387`	FBD	Repeat	379	414	8.5e-07	29.5	FBD
`XP_057808136.1`	Pfam	`PF00646`	F-box	Domain	29	67	7.9e-07	29.5	F-box domain
`XP_057808136.1`	Pfam	`PF23622`	LRR_At1g61320_AtMIF1	Repeat	103	420	2.4e-19	70.7	At1g61320/AtMIF1, LRR domain
`XP_057808136.1`	Pfam	`PF24758`	LRR_At5g56370	Repeat	167	259	6.6e-11	43.0	FBD-associated F-box protein At5g56370, LRR repeats
`XP_057808136.1`	Pfam	`PF08387`	FBD	Repeat	379	414	8.5e-07	29.5	FBD

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057952153.1
AGATTATTATTTCAACCGAGTAAGAACCCATATTTAAGTCGAGACCCAATCCTTCTCAAAAAAAAAAAGTCGAGACCCAATAAACCTAACTTCATAAGTTCTCAGCTGAAACCAAAGGGCTGTTCATAACTTTTTTTTTTTTTTTTTTTCCTGATCTGAACATAGCTGAGTAGTGATGGATGTGAAGTATTTCAAATCCGATTCAGATTTTCTGGCCAAGGAGTGGTGTTATCGGAGATGCAATGGTGGAGTTGATAGGA...

XM_057952152.1
AGATTATTATTTCAACCGAGTAAGAACCCATATTTAAGTCGAGACCCAATCCTTCTCAAAAAAAAAAAGTCGAGACCCAATAAACCTAACTTCATAAGTTCTCAGCTGAAACCAAAGGGCTGTTCATAACTTTTTTTTTTTTTTTTTTTCCTGATCTGAACATAGCTGAGTGATGGATGTGAAGTATTTCAAATCCGATTCAGATTTTCTGGCCAAGGAGTGGTGTTATCGGAGATGCAATGGTGGAGTTGATAGGATTA...

CDS

2 records

下载 CDS FASTA

LOC131022642
ATGGATGTGAAGTATTTCAAATCCGATTCAGATTTTCTGGCCAAGGAGTGGTGTTATCGGAGATGCAATGGTGGAGTTGATAGGATTAGTGAGTTGCCCGATGAAATTATCCTTGGCATATTGTCTTTCCTATCATTGAGGGAATGTGTAACCACTAGTGTTCTTTCTTCCCGATGGTCGGATTTGTGGAAACACACCCCTAATCTCAACTTGAATGCGAAGCTTCTAACCAACCATTATCAGGAGCCTATACAAGGACA...

Protein

2 records

下载 Protein FASTA

XP_057808135.1
MDVKYFKSDSDFLAKEWCYRRCNGGVDRISELPDEIILGILSFLSLRECVTTSVLSSRWSDLWKHTPNLNLNAKLLTNHYQEPIQGHAWDAERCKYIEIVNSILQSHKAPSLKEFRISLYANKSAQCAVAKWLEFVLSRHVERLILDLVCDDTRNSVSTYAVSLEELLRDRPQDLIGFKSLKSLRLKGFRVSGEAIDSFLCNCPLLEQLYIHGSFLTSDVVVCGTALRLKLFHIDNCYGSSENSIKVSAPNLTWLGVCAT...

XP_057808136.1
MDVKYFKSDSDFLAKEWCYRRCNGGVDRISELPDEIILGILSFLSLRECVTTSVLSSRWSDLWKHTPNLNLNAKLLTNHYQEPIQGHAWDAERCKYIEIVNSILQSHKAPSLKEFRISLYANKSAQCAVAKWLEFVLSRHVERLILDLVCDDTRNSVSTYAVSLEELLRDRPQDLIGFKSLKSLRLKGFRVSGEAIDSFLCNCPLLEQLYIHGSFLTSDVVVCGTALRLKLFHIDNCYGSSENSIKVSAPNLTWLGVCAT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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