当前解析结果
SmilChr04G000796| 统一新 Gene ID | SmilChr04G000796 |
|---|---|
| 名称 | SmilChr04G000796 |
| 描述 | uncharacterized SmilChr04G000796 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 9833809 - 9835746 / - |
| NCBI Gene ID | LOC131022967 |
|---|---|
| GeneID | 131022967 |
| locus_tag | - |
| NCBI Name | LOC131022967 |
| 原始查询 | SmilChr04G000796 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os03g0439900; species=rice; confidence=weak |
| 产物 | hit=Os03g0439900; species=rice; confidence=weak |
| Arabidopsis | -- |
| Rice | Os03g0439900- identity=34; qcov=0.183; evalue=2.32e-11; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022967 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057808490.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057808490.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057808490.1 |
| 4 | Cytoplasmic granule | 细胞质颗粒 | 0.20000 | XP_057808490.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057808490.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:9833812 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B125,B90,B92,C87,D11 |
Chr4:9833846 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A4,B10,B49,C41,C73 |
Chr4:9833892 |
G |
A |
EMS_canonical_SNV | stop_gained | 35 | A24,A5,B101,B107,B114,B124,B135,B136,B15,B16,B26,B29,B41,B47,B56,B60,B68,B82,B85,B88,B89,B93,C10,C35,C38,C39,C42,C57,C70,C73,C75,C8,C80,C86,D10 |
Chr4:9833893 |
C |
T |
EMS_canonical_SNV | stop_gained | 134 | A10,A14,A16,A18,A19,A2,A20,A22,A3,A6,A7,A8,A9,B1,B10,B101,B102,B105,B108,B109,B11,B110,B111,B112,B117,B118,B12,B121,B122,B123,B125,B126,B128,B130,B131,B132,B133,B134,B136,B137,B14,B15,B18,B23,B25,B27,B28,B31,B33,B35,B36,B38,B39,B4,B40,B42,B43,B45,B48,B5,B50,B54,B55,B57,B58,B6,B60,B65,B68,B69,B7,B70,B71,B72,B77,B80,B81,B82,B83,B86,B87,B88,B94,B97,B98,C13,C15,C16,C17,C19,C2,C20,C22,C23,C24,C27,C28,C3,C31,C32,C33,C34,C37,C38,C4,C40,C41,C42,C43,C48,C49,C5,C50,C54,C55,C6,C61,C62,C65,C67,C68,C71,C72,C78,C8,C81,C83,C84,C9,D1,D2,D3,D8,D9 |
Chr4:9833894 |
C |
T |
EMS_canonical_SNV | stop_gained | 12 | A15,A16,B103,B12,B45,B56,B73,B81,B96,C30,C39,D11 |
Chr4:9833946 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B67,C85 |
Chr4:9833949 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B68,C49,C53,D10 |
Chr4:9834000 |
G |
A |
EMS_canonical_SNV | stop_gained | 101 | A11,A13,A15,A16,A2,A21,A23,A24,A5,A8,B103,B106,B107,B11,B113,B115,B12,B121,B122,B127,B130,B133,B134,B137,B138,B139,B19,B2,B20,B21,B24,B29,B30,B32,B33,B38,B39,B4,B40,B44,B45,B48,B50,B53,B56,B6,B61,B63,B64,B66,B70,B72,B75,B78,B79,B81,B83,B86,B89,B9,B90,B92,B94,B96,B98,B99,C1,C10,C12,C13,C14,C16,C18,C22,C24,C25,C26,C29,C33,C34,C4,C40,C44,C5,C51,C54,C56,C60,C63,C67,C7,C71,C73,C74,C76,C77,C85,D1,D11,D4,D6 |
Chr4:9834017 |
GAC |
G |
2bp_deletion | frameshift_variant | 19 | A21,B113,B23,B32,B37,B38,B4,B93,B97,C13,C27,C45,C53,C54,C56,C70,C80,C81,D9 |
Chr4:9834020 |
AT |
A |
1bp_deletion | frameshift_variant | 7 | A2,B103,B6,B70,C1,C4,C63 |
Chr4:9834035 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B35 |
Chr4:9834035 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。