Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000836`

染色体: Chr04 坐标: 10496859-10501687 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000836`
名称	SmilChr04G000836
描述	acyl-coenzyme A oxidase 4, peroxisomal-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	10496859 - 10501687 / `+`

ID 对照

NCBI Gene ID	`LOC131022673`
GeneID	`131022673`
locus_tag	`-`
NCBI Name	`LOC131022673`
原始查询	`SmilChr04G000836`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	acyl-coenzyme A oxidase 4, peroxisomal-like
产物	acyl-coenzyme A oxidase 4%2C peroxisomal-like
Arabidopsis	`AT3G51840` (ACX4) acyl-CoA oxidase 4 [Source:NCBI gene (formerly Entrezgene);Acc:824347] identity=85.6; qcov=0.924; evalue=0; confidence=high
Rice	`Os05g0163700` (OsACX4) - identity=80.2; qcov=0.924; evalue=0; confidence=high
GO	GO:0003995 (acyl-CoA dehydrogenase activity); GO:0005777 (peroxisome); GO:0006635 (fatty acid beta-oxidation); GO:0050660 (flavin adenine dinucleotide binding)
KEGG	smil00071 (Fatty acid degradation - Salvia miltiorrhiza (redroot sage)); smil00410 (beta-Alanine metabolism - Salvia miltiorrhiza (redroot sage)); smil00592 (alpha-Linolenic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil00640 (Propanoate metabolism - Salvia miltiorrhiza (redroot sage)); smil01040 (Biosynthesis of unsaturated fatty acids - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01212 (Fatty acid metabolism - Salvia miltiorrhiza (redroot sage)); smil04146 (Peroxisome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00441 (Acyl-CoA_dh_1); PF02770 (Acyl-CoA_dh_M); PF02771 (Acyl-CoA_dh_N)
InterPro	-
eggNOG	-
NR	GeneID:131022673

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Peroxisome	过氧化物酶体	1.00000	`XP_057808173.1`
2	Mitochondrion	线粒体	1.00000	`XP_057808174.1`
3	Mitochondrion matrix	线粒体基质	1.00000	`XP_057808174.1`
4	Cytosol	细胞质基质	0.20000	`XP_057808173.1`
5	Vesicle	囊泡	0.20000	`XP_057808173.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:10497061`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B19,B34,C75
`Chr4:10497291`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:10497292`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A5,B48
`Chr4:10497305`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B35,C83
`Chr4:10497330`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B63,C20
`Chr4:10497334`	`C`	`T`	EMS_canonical_SNV	stop_gained	3	C11,C69,D9
`Chr4:10497334`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C11,C69,D9
`Chr4:10497899`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B139,B98,C18,C22

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057808173.1

439 aa

220

439

Acyl-CoA_dh_N

Acyl-CoA_dh_M

Acyl-CoA_dh_1

PF02771 Acyl-CoA_dh_N 56-165 aa PF02770 Acyl-CoA_dh_M 171-263 aa PF00441 Acyl-CoA_dh_1 280-421 aa

XP_057808174.1

421 aa

210

421

Acyl-CoA_dh_N

Acyl-CoA_dh_M

Acyl-CoA_dh_1

PF02771 Acyl-CoA_dh_N 38-147 aa PF02770 Acyl-CoA_dh_M 153-245 aa PF00441 Acyl-CoA_dh_1 262-403 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057808173.1`	Pfam	`PF02771`	Acyl-CoA_dh_N	Domain	56	165	2.4e-26	93.0	Acyl-CoA dehydrogenase, N-terminal domain
`XP_057808173.1`	Pfam	`PF02770`	Acyl-CoA_dh_M	Domain	171	263	7.5e-21	74.8	Acyl-CoA dehydrogenase, middle domain
`XP_057808173.1`	Pfam	`PF00441`	Acyl-CoA_dh_1	Domain	280	421	3.4e-24	86.4	Acyl-CoA dehydrogenase, C-terminal domain
`XP_057808174.1`	Pfam	`PF02771`	Acyl-CoA_dh_N	Domain	38	147	2.2e-26	93.2	Acyl-CoA dehydrogenase, N-terminal domain
`XP_057808174.1`	Pfam	`PF02770`	Acyl-CoA_dh_M	Domain	153	245	7e-21	74.9	Acyl-CoA dehydrogenase, middle domain
`XP_057808174.1`	Pfam	`PF00441`	Acyl-CoA_dh_1	Domain	262	403	3.1e-24	86.5	Acyl-CoA dehydrogenase, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057952190.1
TGTCATCCAATTTGACCTAGGCAAGTTGAGTTTGGATATAAGGTCGGACATTGCTAATGGATAAAGTTCCGTGCCATTTCTTCTATATTCGCCCATACTTCCTAGTATTTAAATTTGGTTTCTTCTCCAGTTCTTTTCTTGTGCTTATACAATTTCTCTATATTCGTTCGCAATTGAGAGAAATCTGTCGCCATGAAAGTTCCAGCTTCAAGAGCTCAAGAAGATGTGAATGAAGATGCGAAGAGCACGCATTATGATTT...

XM_057952191.1
GTGCAGAAGATGTGAATGAAGATGCGAAGAGCACGCATTATGATTTGCCAGCGTTGGATGTTTCCGTCGCATTTCCTCAAGCAACTCCAGCTTCAGTCTTTCCTCCTAGCGTTCGATGATCTATTGACTGCTGAGGAGCAAGATGTGAGGAAGAGAGTACGAGAGTGCATGGAGAAAGAAGTAGCTCCGATAATGACAAAGTATTGGGAGAAGGCAGAATTTCCATTCCAAGTGATTCCGAAGCTTGGTGCGCTGCGAGT...

CDS

2 records

下载 CDS FASTA

LOC131022673
ATGAAAGTTCCAGCTTCAAGAGCTCAAGAAGATGTGAATGAAGATGCGAAGAGCACGCATTATGATTTGCCAGCGTTGGATGTTTCCGTCGCATTTCCTCAAGCAACTCCAGCTTCAGTCTTTCCTCCTAGCGTGTCGGATTATTATCAGTTCGATGATCTATTGACTGCTGAGGAGCAAGATGTGAGGAAGAGAGTACGAGAGTGCATGGAGAAAGAAGTAGCTCCGATAATGACAAAGTATTGGGAGAAGGCAGAATT...

LOC131022673
ATGAAGATGCGAAGAGCACGCATTATGATTTGCCAGCGTTGGATGTTTCCGTCGCATTTCCTCAAGCAACTCCAGCTTCAGTCTTTCCTCCTAGCGTTCGATGATCTATTGACTGCTGAGGAGCAAGATGTGAGGAAGAGAGTACGAGAGTGCATGGAGAAAGAAGTAGCTCCGATAATGACAAAGTATTGGGAGAAGGCAGAATTTCCATTCCAAGTGATTCCGAAGCTTGGTGCGCTGCGAGTAGCCGGTGGCAGTAT...

Protein

2 records

下载 Protein FASTA

XP_057808173.1
MKVPASRAQEDVNEDAKSTHYDLPALDVSVAFPQATPASVFPPSVSDYYQFDDLLTAEEQDVRKRVRECMEKEVAPIMTKYWEKAEFPFQVIPKLGALRVAGGSIKGYGCPNLSITANAIATAEMARVDASCYTFILVHSSLAMLTIGLCGSEAQKQKYLPSLAELKTVACWGLTEPDYGSDASALRTSARKVEGGWILDGQKRWIGNSTFADVLVIFARNTSTNQINGFIVKKDAPGLQATKIENKIGLRIVQNGDILL...

XP_057808174.1
MKMRRARIMICQRWMFPSHFLKQLQLQSFLLAFDDLLTAEEQDVRKRVRECMEKEVAPIMTKYWEKAEFPFQVIPKLGALRVAGGSIKGYGCPNLSITANAIATAEMARVDASCYTFILVHSSLAMLTIGLCGSEAQKQKYLPSLAELKTVACWGLTEPDYGSDASALRTSARKVEGGWILDGQKRWIGNSTFADVLVIFARNTSTNQINGFIVKKDAPGLQATKIENKIGLRIVQNGDILLKKVFVPDEDRLSGVNSFQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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