当前解析结果
SmilChr04G000848| 统一新 Gene ID | SmilChr04G000848 |
|---|---|
| 名称 | SmilChr04G000848 |
| 描述 | BAG family molecular chaperone regulator 4-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 10739342 - 10742141 / + |
| NCBI Gene ID | LOC131022683 |
|---|---|
| GeneID | 131022683 |
| locus_tag | - |
| NCBI Name | LOC131022683 |
| 原始查询 | SmilChr04G000848 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | BAG family molecular chaperone regulator 4-like |
| 产物 | BAG family molecular chaperone regulator 4-like |
| Arabidopsis | AT3G51780 (BAG4)BCL-2-associated athano 4 [Source:NCBI gene (formerly Entrezgene);Acc:824341] identity=46.2; qcov=0.746; evalue=9.65e-53; confidence=high |
| Rice | Os01g0831200 (OsBAG4)- identity=47.8; qcov=0.796; evalue=9.24e-50; confidence=medium |
| GO | GO:0000774 (adenyl-nucleotide exchange factor activity); GO:0005737 (cytoplasm); GO:0050821 (protein stabilization); GO:0051087 (protein-folding chaperone binding) |
| KEGG | - |
| Pfam | PF00240 (ubiquitin); PF02179 (BAG); PF18037 (Ubiquitin_5) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022683 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057808178.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057808178.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057808178.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057808178.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057808178.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:10739588 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A16,B83,C59 |
Chr4:10739604 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B1,C51 |
Chr4:10739656 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B105,B40,C62 |
Chr4:10739658 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B105,B40,C62 |
Chr4:10739670 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A5,C40,C7 |
Chr4:10739687 |
T |
TC |
1bp_insertion | frameshift_variant | 2 | C40,C7 |
Chr4:10739687 |
T |
TC |
1bp_insertion | CDS_variant | 2 | C40,C7 |
Chr4:10739707 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A5,C40,C7 |
Chr4:10739708 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C40,C7 |
Chr4:10740448 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B124,B79 |
Chr4:10740480 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B119 |
Chr4:10740841 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B66,C79 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057808178.1PF00240
ubiquitin 34-95 aa
PF18037
Ubiquitin_5 49-96 aa
PF02179
BAG 120-195 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808178.1 |
Pfam | PF00240 |
ubiquitin | Domain | 34 | 95 | 4e-10 | 40.0 | Ubiquitin family |
XP_057808178.1 |
Pfam | PF18037 |
Ubiquitin_5 | Domain | 49 | 96 | 3.9e-06 | 27.7 | NUB1 Ubiquitin-like domain |
XP_057808178.1 |
Pfam | PF02179 |
BAG | Family | 120 | 195 | 1.4e-19 | 71.1 | BAG domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。