当前解析结果
SmilChr04G000852| 统一新 Gene ID | SmilChr04G000852 |
|---|---|
| 名称 | SmilChr04G000852 |
| 描述 | receptor-like kinase TMK4 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 10772589 - 10778509 / + |
| NCBI Gene ID | LOC131022986 |
|---|---|
| GeneID | 131022986 |
| locus_tag | - |
| NCBI Name | LOC131022986 |
| 原始查询 | SmilChr04G000852 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor-like kinase TMK4 |
| 产物 | receptor-like kinase TMK4 |
| Arabidopsis | AT3G23750 (AT3G23750)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:821957] identity=40.2; qcov=0.528; evalue=2.06e-21; confidence=medium |
| Rice | Os04g0685900 (OsRLCK174)- identity=40.4; qcov=0.591; evalue=3.37e-16; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022986 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 0.60000 | XP_057808508.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057808508.1 |
| 3 | Vacuole | 液泡 | 0.20000 | XP_057808508.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057808508.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057808508.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:10772613 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C73 |
Chr4:10772643 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr4:10772647 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr4:10772656 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B66,C79 |
Chr4:10772659 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B134,B65,B77 |
Chr4:10772702 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr4:10772719 |
G |
A |
EMS_canonical_SNV | stop_gained | 75 | A1,A11,A13,A20,A21,A22,A25,A5,B1,B100,B102,B112,B114,B121,B123,B125,B126,B128,B134,B14,B19,B31,B34,B38,B39,B40,B41,B42,B43,B44,B48,B5,B51,B58,B6,B64,B65,B69,B70,B73,B77,B78,B8,B81,B84,B88,B90,B91,B92,B95,B99,C12,C13,C14,C16,C2,C22,C36,C4,C41,C47,C50,C51,C52,C61,C64,C65,C66,C67,C70,C85,D1,D3,D4,D6 |
Chr4:10772727 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B66,C79 |
Chr4:10772738 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C84 |
Chr4:10772765 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr4:10772771 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C73 |
Chr4:10772772 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B41,B96 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。