当前解析结果
SmilChr04G000855| 统一新 Gene ID | SmilChr04G000855 |
|---|---|
| 名称 | SmilChr04G000855 |
| 描述 | cytosolic sulfotransferase 5-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 10817802 - 10818188 / - |
| NCBI Gene ID | LOC131022987 |
|---|---|
| GeneID | 131022987 |
| locus_tag | - |
| NCBI Name | LOC131022987 |
| 原始查询 | SmilChr04G000855 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cytosolic sulfotransferase 5-like |
| 产物 | cytosolic sulfotransferase 5-like |
| Arabidopsis | AT3G45070 (AT3G45070)P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:823642] identity=53.5; qcov=0.992; evalue=2.51e-38; confidence=medium |
| Rice | Os12g0137600- identity=50.8; qcov=1.02; evalue=2.64e-35; confidence=medium |
| GO | GO:0005737 (cytoplasm); GO:0008146 (sulfotransferase activity); GO:0051923 (sulfation) |
| KEGG | - |
| Pfam | PF00685 (Sulfotransfer_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022987 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057808510.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057808510.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057808510.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057808510.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057808510.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:10817811 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B124,B79 |
Chr4:10817823 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B66,C79 |
Chr4:10817825 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B124,B79 |
Chr4:10817869 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B124,B79 |
Chr4:10817887 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A21,B64,C16,C50 |
Chr4:10817893 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A16,B83,C59 |
Chr4:10817899 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B104,B119,B66,C79 |
Chr4:10817908 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B124,B79 |
Chr4:10817909 |
GA |
G |
1bp_deletion | frameshift_variant | 2 | B66,C79 |
Chr4:10817909 |
GA |
G |
1bp_deletion | CDS_variant | 2 | B66,C79 |
Chr4:10817922 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B124,B79 |
Chr4:10818003 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B124,B79 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057808510.1PF00685
Sulfotransfer_1 3-122 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808510.1 |
Pfam | PF00685 |
Sulfotransfer_1 | Domain | 3 | 122 | 3.9e-28 | 99.3 | Sulfotransferase domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。