当前解析结果
SmilChr04G000870| 统一新 Gene ID | SmilChr04G000870 |
|---|---|
| 名称 | SmilChr04G000870 |
| 描述 | uncharacterized SmilChr04G000870 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 11018975 - 11022364 / - |
| NCBI Gene ID | LOC131022992 |
|---|---|
| GeneID | 131022992 |
| locus_tag | - |
| NCBI Name | LOC131022992 |
| 原始查询 | SmilChr04G000870 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0202300; species=rice; confidence=low |
| 产物 | hit=Os08g0202300; species=rice; confidence=low |
| Arabidopsis | ATMG00860- identity=26.9; qcov=0.132; evalue=1.13e-10; confidence=weak |
| Rice | Os08g0202300- identity=31.7; qcov=0.336; evalue=1.68e-60; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF00665 (rve); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2); PF29688 (TnsB_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022992 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057808513.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057808513.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057808513.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057808513.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057808513.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:11019008 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B140,C82 |
Chr4:11019073 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B33,C27,C47 |
Chr4:11019096 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B45,B80,C34 |
Chr4:11019122 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr4:11019138 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B51,B91 |
Chr4:11019151 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B69,B9,C52 |
Chr4:11019158 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B65,B71,C27 |
Chr4:11019166 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr4:11019296 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr4:11019464 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B20,B48 |
Chr4:11019467 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C19,C50 |
Chr4:11019488 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B3,C53,C64 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057808513.1PF00078
RVT_1 347-506 aa
PF17919
RT_RNaseH_2 569-667 aa
PF17917
RT_RNaseH 597-696 aa
PF13456
RVT_3 731-848 aa
PF17921
Integrase_H2C2 939-990 aa
PF00665
rve 1005-1103 aa
PF29688
TnsB_C 1065-1124 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808513.1 |
Pfam | PF00078 |
RVT_1 | Domain | 347 | 506 | 1.1e-32 | 114.2 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057808513.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 569 | 667 | 6.7e-20 | 71.7 | RNase H-like domain found in reverse transcriptase |
XP_057808513.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 597 | 696 | 1.5e-12 | 48.3 | RNase H-like domain found in reverse transcriptase |
XP_057808513.1 |
Pfam | PF13456 |
RVT_3 | Domain | 731 | 848 | 1.2e-16 | 61.4 | Reverse transcriptase-like |
XP_057808513.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 939 | 990 | 4.6e-10 | 40.2 | Integrase zinc binding domain |
XP_057808513.1 |
Pfam | PF00665 |
rve | Domain | 1005 | 1103 | 7.2e-19 | 68.7 | Integrase core domain |
XP_057808513.1 |
Pfam | PF29688 |
TnsB_C | Domain | 1065 | 1124 | 2.9e-10 | 40.8 | TnsB C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。