Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000879`

染色体: Chr04 坐标: 11173362-11175955 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000879`
名称	SmilChr04G000879
描述	protein trichome birefringence-like 34
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	11173362 - 11175955 / `+`

ID 对照

NCBI Gene ID	`LOC131022700`
GeneID	`131022700`
locus_tag	`-`
NCBI Name	`LOC131022700`
原始查询	`SmilChr04G000879`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein trichome birefringence-like 34
产物	protein trichome birefringence-like 34
Arabidopsis	`AT2G38320` (TBL34) TRICHOME BIREFRINGENCE-LIKE 34 [Source:NCBI gene (formerly Entrezgene);Acc:818412] identity=40.3; qcov=1.13; evalue=1.75e-107; confidence=medium
Rice	`Os11g0107000` (OsTBL2) - identity=41.5; qcov=0.997; evalue=1.33e-97; confidence=medium
GO	GO:0005794 (Golgi apparatus); GO:0016413 (O-acetyltransferase activity)
KEGG	-
Pfam	PF13839 (PC-Esterase); PF14416 (PMR5N)
InterPro	-
eggNOG	-
NR	GeneID:131022700

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057808197.1`
2	Nucleus	细胞核	0.00000	`XP_057808197.1`
3	Chromosome	染色体	0.00000	`XP_057808197.1`
4	Centromere	着丝粒	0.00000	`XP_057808197.1`
5	Chromatin	染色质	0.00000	`XP_057808197.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:11173571`	`T`	`TGA`	2bp_insertion	frameshift_variant	53	A14,A15,A19,A6,B105,B11,B115,B117,B118,B12,B129,B133,B136,B137,B24,B25,B28,B30,B32,B45,B53,B61,B7,B72,B80,B83,B86,B9,B97,C14,C2,C23,C24,C25,C26,C28,C3,C33,C34,C38,C40,C42,C57,C6,C63,C67,C71,C79,C81,C83,C84,C9,D2
`Chr4:11173574`	`AAG`	`A`	2bp_deletion	frameshift_variant	95	A1,A11,A18,A19,A2,A20,A24,A3,A4,A5,A7,A8,A9,B102,B103,B104,B106,B107,B109,B110,B111,B112,B120,B122,B123,B132,B134,B137,B138,B139,B16,B26,B29,B3,B31,B4,B40,B42,B43,B44,B48,B5,B55,B58,B6,B62,B67,B68,B69,B71,B73,B74,B77,B86,B94,B98,C1,C12,C18,C2,C20,C22,C24,C25,C30,C32,C4,C41,C44,C47,C48,C5,C51,C52,C55,C56,C61,C63,C64,C66,C67,C68,C72,C75,C77,C8,C82,C86,D1,D11,D2,D5,D6,D8,D9
`Chr4:11173578`	`A`	`AT`	1bp_insertion	stop_gained,frameshift_variant	2	B119,D10
`Chr4:11173578`	`A`	`AT`	1bp_insertion	CDS_variant	2	B119,D10
`Chr4:11173596`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr4:11173690`	`C`	`CT`	1bp_insertion	frameshift_variant	87	A14,A15,A18,A22,A23,A6,B105,B11,B110,B115,B118,B121,B124,B126,B127,B128,B129,B133,B136,B137,B140,B17,B23,B24,B28,B3,B30,B32,B35,B37,B41,B45,B50,B51,B53,B55,B61,B63,B69,B7,B70,B72,B73,B79,B80,B81,B83,B86,B87,B9,B97,C14,C15,C17,C2,C20,C21,C23,C24,C25,C26,C27,C28,C3,C33,C34,C36,C38,C40,C42,C45,C54,C57,C6,C63,C65,C67,C71,C78,C79,C81,C82,C83,C9,D2,D4,D9
`Chr4:11173691`	`GA`	`G`	1bp_deletion	frameshift_variant	69	A10,A13,A21,A24,A25,B1,B101,B108,B112,B125,B13,B130,B135,B139,B18,B19,B26,B27,B29,B33,B44,B47,B5,B52,B56,B57,B58,B60,B62,B64,B67,B68,B74,B75,B8,B85,B88,B90,B92,B93,B94,B96,C1,C11,C16,C43,C47,C48,C49,C50,C51,C53,C55,C58,C59,C61,C62,C69,C7,C70,C73,C8,C80,C84,C86,C87,D10,D11,D3
`Chr4:11173715`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr4:11173716`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr4:11173761`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:11174105`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B1,B58
`Chr4:11174109`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A13,B48,B60,C13

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057808197.1

419 aa

210

419

PMR5N

PC-Esterase

PF14416 PMR5N 72-125 aa PF13839 PC-Esterase 126-414 aa

XP_057808198.1

365 aa

182

365

PMR5N

PC-Esterase

PF14416 PMR5N 72-125 aa PF13839 PC-Esterase 126-249 aa PF13839 PC-Esterase 253-360 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057808197.1`	Pfam	`PF14416`	PMR5N	Domain	72	125	3.7e-21	75.9	PMR5 N terminal Domain
`XP_057808197.1`	Pfam	`PF13839`	PC-Esterase	Family	126	414	3e-88	297.2	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
`XP_057808198.1`	Pfam	`PF14416`	PMR5N	Domain	72	125	3e-21	76.2	PMR5 N terminal Domain
`XP_057808198.1`	Pfam	`PF13839`	PC-Esterase	Family	126	249	5.2e-69	234.1	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
`XP_057808198.1`	Pfam	`PF13839`	PC-Esterase	Family	253	360	5.2e-69	234.1	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057952214.1
GAATCCCACCTTTATTAGTTGATGGCCGTATTTCAACAACAACAAATTTAGATGAATTTAACAATCCAATTTGACTTCAACGTATCGCTCAATAATTCAAGAACCTTCAAATACTATATTATATACATAAAGTCATCGAAAAATGTGAATCTCCAAACTTTGCCTAGCTGCATTATAATAGATGGCGCAGCACAATGTTTCCTCCTTAATTAAAGAAAAAATGAATCTTGAAAAGCTCCAAATTAAATTCAAGTCGCCAT...

XM_057952215.1
TATATACATAAAGTCATCGAAAAATGTGAATCTCCAAACTTTGCCTAGCTGCATTATAATAGATGGCGCAGCACAATGTTTCCTCCTTAATTAAAGAAAAAATGAATCTTGAAAAGCTCCAAATTAAATTCAAGTCGCCATACATTGCTGCTTTCTTCCTCATAGCTTTGGTCAGCGCTCTTCTCTATCTCGACAATGCTTCCTCGATTCGAGATCGAGAAACGGGGAAGGATCGCGACGAGGGCGATCCCGTCGCCCTC...

CDS

2 records

下载 CDS FASTA

LOC131022700
ATGGCGCAGCACAATGTTTCCTCCTTAATTAAAGAAAAAATGAATCTTGAAAAGCTCCAAATTAAATTCAAGTCGCCATACATTGCTGCTTTCTTCCTCATAGCTTTGGTCAGCGCTCTTCTCTATCTCGACAATGCTTCCTCGATTCGAGATCGAGAAACGGGGAAGGATCGCGACGAGGGCGATCCCGTCGCCCTCGTTGCAAACGGGACGAGGTGCGACTTGTTTTCGGGCAAATGGATATACGACGTCGCTTCACG...

Protein

2 records

下载 Protein FASTA

XP_057808197.1
MAQHNVSSLIKEKMNLEKLQIKFKSPYIAAFFLIALVSALLYLDNASSIRDRETGKDRDEGDPVALVANGTRCDLFSGKWIYDVASRPLYDEERCSFMLDDYACKKYGRKDFEYQKWRWQPHQCDLPRFNGTALLEKIRGKRVVFVGDSLNKNQWNSMLCLIESSLDQSSNKSVVRYDNLFVFKANEYNVTIEFYWSPLLMESNCDDPYTHSIRDRIVKITSIEKHAKHWNDADILIFDAFMWWLDPTMTLLWGSFGSPD...

XP_057808198.1
MAQHNVSSLIKEKMNLEKLQIKFKSPYIAAFFLIALVSALLYLDNASSIRDRETGKDRDEGDPVALVANGTRCDLFSGKWIYDVASRPLYDEERCSFMLDDYACKKYGRKDFEYQKWRWQPHQCDLPRFNGTALLEKIRGKRVVFVGDSLNKNQWNSMLCLIESSLDQSSNKSVVRYDNLFVFKANEYNVTIEFYWSPLLMESNCDDPYTHSIRDRIVKITSIEKHAKHWNDADILIFDAFMWWLDPTMTLLGETWEEKS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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