Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000891`

染色体: Chr04 坐标: 11425226-11427298 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000891`
名称	SmilChr04G000891
描述	uncharacterized SmilChr04G000891
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	11425226 - 11427298 / `-`

ID 对照

NCBI Gene ID	`LOC131022716`
GeneID	`131022716`
locus_tag	`-`
NCBI Name	`LOC131022716`
原始查询	`SmilChr04G000891`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述	BRISC complex subunit Abro1-like protein [Source:NCBI gene (formerly Entrezgene);Acc:820025]; symbol=AT3G08780; hit=AT3G08780; species=arabidopsis; confidence=medium
产物	BRISC complex subunit Abro1-like protein [Source:NCBI gene (formerly Entrezgene);Acc:820025]; symbol=AT3G08780; hit=AT3G08780; species=arabidopsis; confidence=medium
Arabidopsis	`AT3G08780` (AT3G08780) BRISC complex subunit Abro1-like protein [Source:NCBI gene (formerly Entrezgene);Acc:820025] identity=42.9; qcov=1.07; evalue=5.21e-72; confidence=medium
Rice	`Os07g0540200` (P0458H05.113) - identity=36.8; qcov=1.03; evalue=1.24e-42; confidence=medium
GO	GO:0005634 (nucleus); GO:0031593 (polyubiquitin modification-dependent protein binding)
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131022716

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057808210.1`
2	Chromosome	染色体	0.00000	`XP_057808210.1`
3	Centromere	着丝粒	0.00000	`XP_057808210.1`
4	Chromatin	染色质	0.00000	`XP_057808210.1`
5	Telomere	端粒	0.00000	`XP_057808210.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:11426258`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C23
`Chr4:11426421`	`GC`	`G`	1bp_deletion	frameshift_variant	1	D6
`Chr4:11426421`	`GC`	`G`	1bp_deletion	CDS_variant	1	D6
`Chr4:11426456`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C57
`Chr4:11426494`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A20,C19
`Chr4:11426497`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B64
`Chr4:11426499`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B110,C15
`Chr4:11426529`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C19
`Chr4:11426559`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B12
`Chr4:11426567`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B12
`Chr4:11426572`	`G`	`A`	EMS_canonical_SNV	stop_gained	12	B118,B31,B5,B56,B75,B88,B97,C33,C4,C46,C48,D1
`Chr4:11426576`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B108

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057952230.1
AAAAAAAAACTATTTCAATTTTCATCGCTTCAAAAATCACACACACAACACACAGTAGCGAGCAAACCAACAATGGACGTTCCGATCGACAAAATCCAGATTTCCGGCGCGTGCCTAGCTTCCCTCCTCCACCGCGCCTCCTCCGCCATCGGCGACACCCACGGCTATCTCTTCGGCCACGCCGCCCTCTCCATCTCAACCCCCCTCTCCGACCACCCAACCGCCGAAGCCCCCACCTCACTTCTCACCACCACCATCAC...

XM_057952229.1
AAAAAAAACTATTTCAATTTTCATCGCTTCAAAAATCACACACACAACACACAGTAGCGAGCAAACCAACAATGGACGTTCCGATCGACAAAATCCAGATTTCCGGCGCGTGCCTAGCTTCCCTCCTCCACCGCGCCTCCTCCGCCATCGGCGACACCCACGGCTATCTCTTCGGCCACGCCGCCCTCTCCATCTCAACCCCCCTCTCCGACCACCCAACCGCCGAAGCCCCCACCTCACTTCTCACCACCACCATCACC...

CDS

3 records

下载 CDS FASTA

LOC131022716
ATGGACGTTCCGATCGACAAAATCCAGATTTCCGGCGCGTGCCTAGCTTCCCTCCTCCACCGCGCCTCCTCCGCCATCGGCGACACCCACGGCTATCTCTTCGGCCACGCCGCCCTCTCCATCTCAACCCCCCTCTCCGACCACCCAACCGCCGAAGCCCCCACCTCACTTCTCACCACCACCATCACCTCCTTCCTCTCCCTTCCCTCCCACCTCCCCCTCCCGCCGCCGCCGCCATCCGCTGCCTCGCTCCTCGGCTG...

Protein

3 records

下载 Protein FASTA

XP_057808210.1
MDVPIDKIQISGACLASLLHRASSAIGDTHGYLFGHAALSISTPLSDHPTAEAPTSLLTTTITSFLSLPSHLPLPPPPPSAASLLGWFSARRKTPLRPSLKDSTASLSLSSSPSLAITPQNSTLSLPPSLFLLLTTPFQDQLIHTHEYKAFRYSGSSFEPKSLSIVNIGPSFRSQYDSFSPNSQFPMMDCELRGPNAMVEDEIDESLAGKRDQLRNQKQLDLCAVGFEIGRLGKLMGSEAAYTAEMEDLYDKMLAKIDAL...

XP_057808212.1
MDVPIDKIQISGACLASLLHRASSAIGDTHGYLFGHAALSISTPLSDHPTAEAPTSLLTTTITSFLSLPSHLPLPPPPPSAASLLGWFSARRKTPLRPSLKDSTASLSLSSSPSLAITPQNSTLSLPPSLFLLLTTPFQDQLIHTHEYKAFRYSGSSFEPKSLSIVNIGPSFRSQYDSFSPNSQFPMMDCELRGPNAMVEDEIDESLAGKRDQLRNQKQLDLCAVGFEIGRLGKLMGSEAAYTAEMEDLYDKMLAKIDAL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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