Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000902`

染色体: Chr04 坐标: 11742061-11744809 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000902`
名称	SmilChr04G000902
描述	probable protein phosphatase 2C 73
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	11742061 - 11744809 / `-`

ID 对照

NCBI Gene ID	`LOC131022726`
GeneID	`131022726`
locus_tag	`-`
NCBI Name	`LOC131022726`
原始查询	`SmilChr04G000902`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable protein phosphatase 2C 73
产物	probable protein phosphatase 2C 73
Arabidopsis	`AT5G01700` (AT5G01700) Protein phosphatase 2C family protein [Source:NCBI gene (formerly Entrezgene);Acc:831695] identity=53.9; qcov=0.822; evalue=8.75e-99; confidence=high
Rice	`Os12g0108600` (OsPP123) - identity=53.2; qcov=0.907; evalue=1.15e-107; confidence=high
GO	GO:0004722 (protein serine/threonine phosphatase activity); GO:0006470 (protein dephosphorylation)
KEGG	-
Pfam	PF00481 (PP2C); PF13672 (PP2C_2)
InterPro	-
eggNOG	-
NR	GeneID:131022726

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057808223.1`
2	Cytoplasm	细胞质	1.00000	`XP_057808223.1`
3	Cytosol	细胞质基质	0.80000	`XP_057808222.1`
4	Chromosome	染色体	0.00000	`XP_057808223.1`
5	Centromere	着丝粒	0.00000	`XP_057808223.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:11742335`	`TCC`	`T`	2bp_deletion	frameshift_variant	1	B70
`Chr4:11742335`	`TCC`	`T`	2bp_deletion	CDS_variant	1	B70
`Chr4:11742351`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B134,B65,B77
`Chr4:11742442`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr4:11742462`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	D7,D8
`Chr4:11742468`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr4:11742650`	`C`	`CG`	1bp_insertion	frameshift_variant	1	C85
`Chr4:11742650`	`C`	`CG`	1bp_insertion	CDS_variant	1	C85
`Chr4:11742891`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B117,B54
`Chr4:11742971`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C58,C78
`Chr4:11743035`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B117,B18,B54
`Chr4:11743204`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B9,C54

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057808222.1

410 aa

205

410

PP2C_2

PP2C

PF13672 PP2C_2 59-302 aa PF00481 PP2C 65-323 aa

XP_057808223.1

332 aa

166

332

PP2C

PF00481 PP2C 5-245 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057808222.1`	Pfam	`PF13672`	PP2C_2	Family	59	302	7.1e-07	29.7	Protein phosphatase 2C
`XP_057808222.1`	Pfam	`PF00481`	PP2C	Family	65	323	5.5e-40	138.4	Protein phosphatase 2C
`XP_057808223.1`	Pfam	`PF00481`	PP2C	Family	5	245	2.2e-39	136.4	Protein phosphatase 2C

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057952239.1
AAAATTAAGAGGGCGAAAGAGAAAGAAATGTTGTGATAGATAGGAGAGGGTGATTGTGTGGGCACATGCGCCATTGCGACATCAATGCTGTCGTAAATGGCCATTTTTGTCTACCCAAAATAATCCCCCCTTTTCTGATTTTTCCTTTGGAGAAGAAAAAATCTGCAAAAAGATTTGAACTTTGTTAGAAAATTTGATAAGAAAATTCAATCCCACCATATATACTTTAGAAAGAAAATAAAATAAAATTCAAACAGCTC...

XM_057952240.1
TCCAAGTATGTCTCCATGTATAGTCAGCAAGGGAGGAAGGGAGTCAATCAAGATGCCATGACTGTTTGGGAGGTATAGACCAAACAAATCATCAACAATTTAATCTTGATTTTGCCAATGTCATTATAGGTTTTCAGGGGACAGGGACATGTTGTTCTGCGGCGTGTTCGACGGCCACGGCCCGTCCGGCCACAAGGTGTCGCAATACGTCCGCGACTTCCTGCCGACTAAGATCTCCCAACTGTACAGACAGCCCAGCA...

CDS

2 records

下载 CDS FASTA

LOC131022726
ATGGGCGCGTGCTGCTCCTGCCATAGGGGCGCCCCCATCAGGAGGTACGACGTCGAGGAGTACGAGGAGAGGAGGAGGCACGACGATGGAGGCGTCGTGTTGAGAGGTGACGGCGGCGCCCGGGTCCGGCTGCAGGGCTCCTCCAAGTATGTCTCCATGTATAGTCAGCAAGGGAGGAAGGGAGTCAATCAAGATGCCATGACTGTTTGGGAGAGGTTTTCAGGGGACAGGGACATGTTGTTCTGCGGCGTGTTCGACGG...

LOC131022726
ATGTTGTTCTGCGGCGTGTTCGACGGCCACGGCCCGTCCGGCCACAAGGTGTCGCAATACGTCCGCGACTTCCTGCCGACTAAGATCTCCCAACTGTACAGACAGCCCAGCATCGATGGGAGGTGTGTAGTGATGGACATAGCCGATGATGAAACCGACTCTCGGAATCCGCTCTTCCTCTCGTGGAAGGCTCGCCTCACCCAGTGCTTCCACGACATGGACGACCAGCTCGAGAAGGATACCTCAATCGAGACCTATTG...

Protein

2 records

下载 Protein FASTA

XP_057808222.1
MGACCSCHRGAPIRRYDVEEYEERRRHDDGGVVLRGDGGARVRLQGSSKYVSMYSQQGRKGVNQDAMTVWERFSGDRDMLFCGVFDGHGPSGHKVSQYVRDFLPTKISQLYRQPSIDGRCVVMDIADDETDSRNPLFLSWKARLTQCFHDMDDQLEKDTSIETYCSGTTSVSVLKKGEHLIISNLGDSRAVLCKRDDSNQLLAEQLTVDLKPNVPSETKRIIDRQGRVQAMEEEPNVYRIWMPHEDCPGLAMARAFGDFC...

XP_057808223.1
MLFCGVFDGHGPSGHKVSQYVRDFLPTKISQLYRQPSIDGRCVVMDIADDETDSRNPLFLSWKARLTQCFHDMDDQLEKDTSIETYCSGTTSVSVLKKGEHLIISNLGDSRAVLCKRDDSNQLLAEQLTVDLKPNVPSETKRIIDRQGRVQAMEEEPNVYRIWMPHEDCPGLAMARAFGDFCLKDYGLISTPVVSYRKLTDRDEFVVLATDGVWDALSNDEVVKIVASARDRSTAAQSLVENAVRAWRDKYPRSKIDDCA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器