当前解析结果
SmilChr04G000903| 统一新 Gene ID | SmilChr04G000903 |
|---|---|
| 名称 | SmilChr04G000903 |
| 描述 | uncharacterized SmilChr04G000903 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 11760419 - 11762719 / - |
| NCBI Gene ID | LOC131022728 |
|---|---|
| GeneID | 131022728 |
| locus_tag | - |
| NCBI Name | LOC131022728 |
| 原始查询 | SmilChr04G000903 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | methyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:831693]; symbol=AT5G01710; hit=AT5G01710; species=arabidopsis; confidence=high |
| 产物 | methyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:831693]; symbol=AT5G01710; hit=AT5G01710; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G01710 (AT5G01710)methyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:831693] identity=65.7; qcov=1.01; evalue=0; confidence=high |
| Rice | Os07g0692401- identity=54.5; qcov=0.838; evalue=2.22e-164; confidence=high |
| GO | GO:0008757 (S-adenosylmethionine-dependent methyltransferase activity) |
| KEGG | - |
| Pfam | PF08241 (Methyltransf_11); PF25276 (DUF7870) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022728 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057808225.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057808225.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057808225.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057808225.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057808225.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:11760848 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:11761053 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B129 |
Chr4:11761139 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A1,C23,D11 |
Chr4:11761457 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B22,B84,D7,D8 |
Chr4:11761746 |
AC |
A |
1bp_deletion | frameshift_variant | 5 | A7,B58,B79,C21,C48 |
Chr4:11761746 |
AC |
A |
1bp_deletion | CDS_variant | 5 | A7,B58,B79,C21,C48 |
Chr4:11761748 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A7,B58,B79,C21 |
Chr4:11761875 |
TTC |
T |
2bp_deletion | frameshift_variant | 20 | A1,A4,A7,B105,B118,B22,B31,B43,B52,B60,B74,B78,B79,C21,C22,C24,C72,C74,C76,C9 |
Chr4:11761883 |
A |
AC |
1bp_insertion | frameshift_variant | 22 | A1,A4,A7,B105,B118,B22,B31,B36,B43,B52,B60,B74,B78,B79,C15,C21,C22,C24,C72,C74,C76,C9 |
Chr4:11761884 |
CCG |
C |
2bp_deletion | frameshift_variant | 18 | A3,B106,B13,B140,B22,B3,B58,B64,B67,B8,B95,C15,C24,C44,C64,C80,C81,D9 |
Chr4:11761923 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B31,B79,C15,C52 |
Chr4:11761962 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C75 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057808225.1PF08241
Methyltransf_11 156-206 aa
PF25276
DUF7870 282-362 aa
PF25276
DUF7870 421-519 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808225.1 |
Pfam | PF08241 |
Methyltransf_11 | Domain | 156 | 206 | 1.6e-05 | 26.2 | Methyltransferase domain |
XP_057808225.1 |
Pfam | PF25276 |
DUF7870 | Domain | 282 | 362 | 7.8e-36 | 124.5 | Domain of unknown function (DUF7870) |
XP_057808225.1 |
Pfam | PF25276 |
DUF7870 | Domain | 421 | 519 | 7.8e-36 | 124.5 | Domain of unknown function (DUF7870) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。