当前解析结果
SmilChr04G000908| 统一新 Gene ID | SmilChr04G000908 |
|---|---|
| 名称 | SmilChr04G000908 |
| 描述 | F-box/LRR-repeat protein 3-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 11804288 - 11808089 / - |
| NCBI Gene ID | LOC131022732 |
|---|---|
| GeneID | 131022732 |
| locus_tag | - |
| NCBI Name | LOC131022732 |
| 原始查询 | SmilChr04G000908 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | F-box/LRR-repeat protein 3-like |
| 产物 | F-box/LRR-repeat protein 3-like |
| Arabidopsis | AT5G01720 (AT5G01720)RNI-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831688] identity=65; qcov=0.973; evalue=0; confidence=high |
| Rice | Os12g0108500 (OsFbox636)- identity=55.2; qcov=0.974; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding); GO:0019005 (SCF ubiquitin ligase complex); GO:0031146 (SCF-dependent proteasomal ubiquitin-dependent protein catabolic process) |
| KEGG | - |
| Pfam | PF13516 (LRR_6); PF25372 (LRR_FBXL15) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022732 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057808232.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057808232.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057808232.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057808232.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057808232.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:11804784 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B132 |
Chr4:11804807 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:11804866 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | C16,C50,C62,D3 |
Chr4:11804902 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr4:11804947 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B112 |
Chr4:11805200 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | C39,C75,D10,D6 |
Chr4:11805268 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C84 |
Chr4:11805269 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C39,C75,D6 |
Chr4:11805654 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | D10,D11 |
Chr4:11806023 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C35 |
Chr4:11806585 |
GAC |
G |
2bp_deletion | frameshift_variant | 1 | B93 |
Chr4:11806585 |
GAC |
G |
2bp_deletion | CDS_variant | 1 | B93 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057808232.1PF13516
LRR_6 253-275 aa
PF25372
LRR_FBXL15 329-477 aa
PF13516
LRR_6 330-351 aa
PF13516
LRR_6 407-429 aa
PF25372
LRR_FBXL15 457-608 aa
PF13516
LRR_6 537-557 aa
PF13516
LRR_6 560-582 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808232.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 253 | 275 | 2.6e-23 | 80.9 | Leucine Rich repeat |
XP_057808232.1 |
Pfam | PF25372 |
LRR_FBXL15 | Repeat | 329 | 477 | 1.8e-29 | 103.2 | F-box/LRR-repeat protein 15, leucine rich repeat domain |
XP_057808232.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 330 | 351 | 2.6e-23 | 80.9 | Leucine Rich repeat |
XP_057808232.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 407 | 429 | 2.6e-23 | 80.9 | Leucine Rich repeat |
XP_057808232.1 |
Pfam | PF25372 |
LRR_FBXL15 | Repeat | 457 | 608 | 1.8e-29 | 103.2 | F-box/LRR-repeat protein 15, leucine rich repeat domain |
XP_057808232.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 537 | 557 | 2.6e-23 | 80.9 | Leucine Rich repeat |
XP_057808232.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 560 | 582 | 2.6e-23 | 80.9 | Leucine Rich repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。