当前解析结果
SmilChr04G000909| 统一新 Gene ID | SmilChr04G000909 |
|---|---|
| 名称 | SmilChr04G000909 |
| 描述 | uncharacterized SmilChr04G000909 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 11844109 - 11844663 / + |
| NCBI Gene ID | LOC131023004 |
|---|---|
| GeneID | 131023004 |
| locus_tag | - |
| NCBI Name | LOC131023004 |
| 原始查询 | SmilChr04G000909 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | RNA-directed DNA polymerase (reverse transcriptase)-related family protein [Source:NCBI gene (formerly Entrezgene);Acc:822013]; symbol=AT3G24255; hit=AT3G24255; species=arabidopsis; confidence=low |
| 产物 | RNA-directed DNA polymerase (reverse transcriptase)-related family protein [Source:NCBI gene (formerly Entrezgene);Acc:822013]; symbol=AT3G24255; hit=AT3G24255; species=arabidopsis; confidence=low |
| Arabidopsis | AT3G24255 (AT3G24255)RNA-directed DNA polymerase (reverse transcriptase)-related family protein [Source:NCBI gene (formerly Entrezgene);Acc:822013] identity=31.2; qcov=0.837; evalue=2.31e-20; confidence=low |
| Rice | Os02g0118800- identity=31.9; qcov=0.766; evalue=1.76e-15; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF13966 (zf-RVT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023004 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057808524.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057808524.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057808524.1 |
| 4 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057808524.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057808524.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:11844115 |
CT |
C |
1bp_deletion | frameshift_variant | 39 | A24,A5,A6,B101,B102,B113,B114,B127,B135,B136,B15,B26,B29,B33,B37,B47,B56,B60,B68,B74,B85,B88,B89,B93,B96,C10,C28,C33,C38,C40,C42,C60,C64,C66,C7,C73,C8,C80,C86 |
Chr4:11844120 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr4:11844121 |
C |
T |
EMS_canonical_SNV | stop_gained | 34 | A18,A7,B102,B126,B129,B131,B18,B22,B29,B42,B47,B51,B52,B81,B85,B86,B94,C12,C14,C16,C2,C25,C28,C31,C32,C41,C43,C45,C51,C65,C68,C81,D3,D5 |
Chr4:11844135 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B102,B126,B42,C28,C43 |
Chr4:11844150 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr4:11844175 |
GA |
G |
1bp_deletion | frameshift_variant | 4 | A7,B121,C45,D5 |
Chr4:11844175 |
GA |
G |
1bp_deletion | CDS_variant | 4 | A7,B121,C45,D5 |
Chr4:11844214 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr4:11844215 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B134,B65,B77,C39,C75 |
Chr4:11844259 |
AG |
A |
1bp_deletion | frameshift_variant | 6 | A13,B108,B111,C83,D3,D4 |
Chr4:11844261 |
G |
GAT |
2bp_insertion | frameshift_variant | 33 | A22,A3,A6,A9,B108,B110,B117,B121,B140,B35,B37,B38,B39,B46,B54,B66,B79,B82,B85,B94,C11,C17,C4,C41,C49,C52,C66,C67,C68,C73,C75,C9,D4 |
Chr4:11844286 |
AG |
A |
1bp_deletion | frameshift_variant | 31 | A1,A25,B10,B122,B129,B139,B16,B19,B25,B33,B36,B4,B46,B53,B72,B89,B9,B90,B96,C18,C27,C31,C46,C52,C54,C56,C69,C77,C83,C86,D4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057808524.1PF13966
zf-RVT 9-93 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808524.1 |
Pfam | PF13966 |
zf-RVT | Domain | 9 | 93 | 1e-22 | 81.3 | zinc-binding in reverse transcriptase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。