当前解析结果
SmilChr04G000910| 统一新 Gene ID | SmilChr04G000910 |
|---|---|
| 名称 | SmilChr04G000910 |
| 描述 | solute carrier family 40 member 2 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 11845520 - 11850068 / - |
| NCBI Gene ID | LOC131022733 |
|---|---|
| GeneID | 131022733 |
| locus_tag | - |
| NCBI Name | LOC131022733 |
| 原始查询 | SmilChr04G000910 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | solute carrier family 40 member 2 |
| 产物 | solute carrier family 40 member 2 |
| Arabidopsis | AT5G03570 (IREG2)iron regulated 2 [Source:NCBI gene (formerly Entrezgene);Acc:831787] identity=58.3; qcov=1; evalue=0; confidence=high |
| Rice | Os06g0560000- identity=58.5; qcov=1.01; evalue=1.58e-167; confidence=high |
| GO | GO:0005381 (iron ion transmembrane transporter activity); GO:0016020 (membrane); GO:0034755 (iron ion transmembrane transport) |
| KEGG | smil04081 (Hormone signaling - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF06963 (FPN1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022733 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 0.60000 | XP_057808233.1 |
| 2 | Vacuole | 液泡 | 0.40000 | XP_057808233.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.40000 | XP_057808233.1 |
| 4 | Cytoplasmic vesicle | 细胞质囊泡 | 0.20000 | XP_057808233.1 |
| 5 | Trans-golgi network | Trans-golgi network | 0.20000 | XP_057808235.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:11845898 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B124,B79 |
Chr4:11846594 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A2,A8 |
Chr4:11846637 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | C16,C50,C62,D3 |
Chr4:11846765 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A15,B103,B127,B54 |
Chr4:11846788 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr4:11846853 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B33,B49,C48 |
Chr4:11846862 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B135,C58 |
Chr4:11846963 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A21,B113 |
Chr4:11847114 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:11847157 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B125,B42,B43,B53,C41 |
Chr4:11847170 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
Chr4:11847389 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | C16,C50,C62,D3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057808233.1PF06963
FPN1 20-458 aa
XP_057808234.1PF06963
FPN1 18-455 aa
XP_057808235.1PF06963
FPN1 1-422 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808233.1 |
Pfam | PF06963 |
FPN1 | Family | 20 | 458 | 1.3e-157 | 525.6 | Ferroportin1 (FPN1) |
XP_057808234.1 |
Pfam | PF06963 |
FPN1 | Family | 18 | 455 | 2e-157 | 525.0 | Ferroportin1 (FPN1) |
XP_057808235.1 |
Pfam | PF06963 |
FPN1 | Family | 1 | 422 | 3.6e-149 | 497.8 | Ferroportin1 (FPN1) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。