Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000916`

染色体: Chr04 坐标: 11914037-11918367 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000916`
名称	SmilChr04G000916
描述	uncharacterized SmilChr04G000916
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	11914037 - 11918367 / `-`

ID 对照

NCBI Gene ID	`LOC131022740`
GeneID	`131022740`
locus_tag	`-`
NCBI Name	`LOC131022740`
原始查询	`SmilChr04G000916`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	2-oxoglutarate-dependent dioxygenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:820633]; symbol=AT3G14160; hit=AT3G14160; species=arabidopsis; confidence=medium
产物	2-oxoglutarate-dependent dioxygenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:820633]; symbol=AT3G14160; hit=AT3G14160; species=arabidopsis; confidence=medium
Arabidopsis	`AT3G14160` (AT3G14160) 2-oxoglutarate-dependent dioxygenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:820633] identity=61.2; qcov=0.462; evalue=1.96e-94; confidence=medium
Rice	`Os03g0816500` - identity=54.4; qcov=0.491; evalue=8.46e-86; confidence=medium
GO	GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0008198 (ferrous iron binding); GO:0035513 (oxidative RNA demethylation); GO:0035515 (oxidative RNA demethylase activity); GO:0035516 (broad specificity oxidative DNA demethylase activity); GO:0035552 (GO:0035552)
KEGG	-
Pfam	PF13532 (2OG-FeII_Oxy_2)
InterPro	-
eggNOG	-
NR	GeneID:131022740

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	0.60000	`XP_057808238.1`
2	Nucleus	细胞核	0.40000	`XP_057808238.1`
3	Mitochondrion	线粒体	0.20000	`XP_057808238.1`
4	Chromosome	染色体	0.00000	`XP_057808238.1`
5	Centromere	着丝粒	0.00000	`XP_057808238.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:11915469`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:11916357`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:11916380`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B35,D3
`Chr4:11916415`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B117,B54

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057808238.1

491 aa

246

491

2OG-FeII_Oxy_2

PF13532 2OG-FeII_Oxy_2 272-489 aa

XP_057808239.1

491 aa

246

491

2OG-FeII_Oxy_2

PF13532 2OG-FeII_Oxy_2 272-489 aa

XP_057808241.1

491 aa

246

491

2OG-FeII_Oxy_2

PF13532 2OG-FeII_Oxy_2 272-489 aa

XP_057808242.1

491 aa

246

491

2OG-FeII_Oxy_2

PF13532 2OG-FeII_Oxy_2 272-489 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057808238.1`	Pfam	`PF13532`	2OG-FeII_Oxy_2	Domain	272	489	2.5e-43	149.3	2OG-Fe(II) oxygenase superfamily
`XP_057808239.1`	Pfam	`PF13532`	2OG-FeII_Oxy_2	Domain	272	489	2.5e-43	149.3	2OG-Fe(II) oxygenase superfamily
`XP_057808241.1`	Pfam	`PF13532`	2OG-FeII_Oxy_2	Domain	272	489	2.5e-43	149.3	2OG-Fe(II) oxygenase superfamily
`XP_057808242.1`	Pfam	`PF13532`	2OG-FeII_Oxy_2	Domain	272	489	2.5e-43	149.3	2OG-Fe(II) oxygenase superfamily

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057952259.1
TCTTTGTCAAATTAACTATCTTATATTTCATCTATAAAAAAGTGTATAATTAATTTTATTTCTTTATCTTGAACTATTCTTCTCGGTTTTTGCTCTCTTTCTCTGTCTGCTCTTTTATTTTTTGCTTTCTCAGTTTAGATACCATTCGTCTGTTCTCTTTCTACGTGGAAATTAGGAGACTTCAAGTTGACTACTAAGTTGCGCCATAACTGAAGTGAAATTTAAGCAAGTTGAGCTCATGCATCGAGGATTCTACCGTA...

XM_057952258.1
TCTTTGTCAAATTAACTATCTTATATTTCATCTATAAAAAAGTGTATAATTAATTTTATTTCTTTATCTTGAACTATTCTTCTCGGTTTTTGCTCTCTTTCTCTGTCTGCTCTTTTATTTTTTGCTTTCTCAGTTTAGATACCATTCGTCTGTTCTCTTTCTACGTGGAAATTAGGAGACTTCAAGTTGACTACTAAGCGCTTTGTGATTAAATTACAGTTGCGCCATAACTGAAGTGAAATTTAAGCAAGTTGAGCTCA...

CDS

4 records

下载 CDS FASTA

LOC131022740
ATGCATCGAGGATTCTACCGTACAACCTTAGCAGCAGCGCGGTTGTTCAACGAATCGAGTGCTCTTCGTCTTGGAAAGATCATGAACAAAAGCGTGAGATCAATGGCTGGTGGAAATTCCGCGACTTCGCACATCAAGATTTCGGAGCAAGAACGAGGGCAGCCGCAGCCTATCAATTCATCAACATATGAGAAGGATTATCCTCCACTTTCTGTCAATTTTGTTAAATCTAAACGGGGAACTAGATTACCCGTGGTCAA...

Protein

4 records

下载 Protein FASTA

XP_057808238.1
MHRGFYRTTLAAARLFNESSALRLGKIMNKSVRSMAGGNSATSHIKISEQERGQPQPINSSTYEKDYPPLSVNFVKSKRGTRLPVVNCSKQKPEVAQNIMPLQHEASNIVTCSGEKLVVQNVEPLQREAANLITCSKQNLEKEVHNISAQCEASTSMSDHIDSGLPTSFGKKQLSSSRKPKVRQTRVHEHQEAKRRPKPSSKPSSYSAIEDPFDICLPKSSDSPNYVNKRYTRVCSPMRQPAEENEQSKGITEKGNDTED...

XP_057808239.1
MHRGFYRTTLAAARLFNESSALRLGKIMNKSVRSMAGGNSATSHIKISEQERGQPQPINSSTYEKDYPPLSVNFVKSKRGTRLPVVNCSKQKPEVAQNIMPLQHEASNIVTCSGEKLVVQNVEPLQREAANLITCSKQNLEKEVHNISAQCEASTSMSDHIDSGLPTSFGKKQLSSSRKPKVRQTRVHEHQEAKRRPKPSSKPSSYSAIEDPFDICLPKSSDSPNYVNKRYTRVCSPMRQPAEENEQSKGITEKGNDTED...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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