当前解析结果
SmilChr04G000922| 统一新 Gene ID | SmilChr04G000922 |
|---|---|
| 名称 | SmilChr04G000922 |
| 描述 | uncharacterized SmilChr04G000922 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 12057878 - 12064256 / - |
| NCBI Gene ID | LOC131022747 |
|---|---|
| GeneID | 131022747 |
| locus_tag | - |
| NCBI Name | LOC131022747 |
| 原始查询 | SmilChr04G000922 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | P0034A04.101-1; symbol=P0034A04.101-1; hit=Os07g0691200; species=rice; confidence=high |
| 产物 | P0034A04.101-1; symbol=P0034A04.101-1; hit=Os07g0691200; species=rice; confidence=high |
| Arabidopsis | AT3G08840 (AT3G08840)D-alanine-D-alanine ligase family [Source:NCBI gene (formerly Entrezgene);Acc:820031] identity=66.2; qcov=0.965; evalue=0; confidence=high |
| Rice | Os07g0691200 (P0034A04.101-1)- identity=66.7; qcov=0.961; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0008716 (D-alanine-D-alanine ligase activity); GO:0009252 (peptidoglycan biosynthetic process); GO:0009507 (chloroplast); GO:0046872 (metal ion binding) |
| KEGG | - |
| Pfam | PF01820 (Dala_Dala_lig_N); PF07478 (Dala_Dala_lig_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022747 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057808252.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 0.40000 | XP_057808252.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057808252.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057808252.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057808252.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:12058414 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B66,B82,C79 |
Chr4:12058420 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B66,B82,C79,C81 |
Chr4:12058426 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
Chr4:12058464 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B113,B117,B54 |
Chr4:12058959 |
G |
GTA |
2bp_insertion | frameshift_variant | 1 | B66 |
Chr4:12058959 |
G |
GTA |
2bp_insertion | CDS_variant | 1 | B66 |
Chr4:12058974 |
G |
GT |
1bp_insertion | frameshift_variant | 22 | A10,A25,A5,B119,B123,B131,B137,B34,B46,B48,B69,B73,B97,B98,C19,C41,C54,C62,C67,C68,C7,C77 |
Chr4:12058987 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A13,C13 |
Chr4:12059143 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B22,B84,D7,D8 |
Chr4:12059299 |
CA |
C |
1bp_deletion | frameshift_variant | 1 | B78 |
Chr4:12059299 |
CA |
C |
1bp_deletion | CDS_variant | 1 | B78 |
Chr4:12059358 |
GCC |
G |
2bp_deletion | frameshift_variant | 43 | A1,A10,A20,A25,A3,A5,B119,B123,B129,B131,B137,B14,B25,B28,B34,B44,B46,B48,B5,B6,B69,B71,B73,B93,B97,B98,C19,C23,C26,C32,C35,C41,C44,C46,C52,C54,C57,C62,C67,C68,C7,C76,C77 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057808252.1PF01820
Dala_Dala_lig_N 81-196 aa
PF07478
Dala_Dala_lig_C 253-455 aa
PF01820
Dala_Dala_lig_N 488-655 aa
PF07478
Dala_Dala_lig_C 793-907 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808252.1 |
Pfam | PF01820 |
Dala_Dala_lig_N | Family | 81 | 196 | 1.8e-46 | 158.4 | D-ala D-ala ligase N-terminus |
XP_057808252.1 |
Pfam | PF07478 |
Dala_Dala_lig_C | Family | 253 | 455 | 6.9e-35 | 121.1 | D-ala D-ala ligase C-terminus |
XP_057808252.1 |
Pfam | PF01820 |
Dala_Dala_lig_N | Family | 488 | 655 | 1.8e-46 | 158.4 | D-ala D-ala ligase N-terminus |
XP_057808252.1 |
Pfam | PF07478 |
Dala_Dala_lig_C | Family | 793 | 907 | 6.9e-35 | 121.1 | D-ala D-ala ligase C-terminus |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。