Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000934`

染色体: Chr04 坐标: 12183339-12185220 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000934`
名称	SmilChr04G000934
描述	pentatricopeptide repeat-containing protein At2g38420, mitochondrial-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	12183339 - 12185220 / `-`

ID 对照

NCBI Gene ID	`LOC131022756`
GeneID	`131022756`
locus_tag	`-`
NCBI Name	`LOC131022756`
原始查询	`SmilChr04G000934`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At2g38420, mitochondrial-like
产物	pentatricopeptide repeat-containing protein At2g38420%2C mitochondrial-like
Arabidopsis	`AT2G38420` (AT2G38420) Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818423] identity=34.2; qcov=0.908; evalue=1.6e-84; confidence=low
Rice	`Os12g0109900` (OsRBP) - identity=30.3; qcov=0.635; evalue=4.89e-35; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3)
InterPro	-
eggNOG	-
NR	GeneID:131022756

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057808259.1`
2	Nucleus	细胞核	0.00000	`XP_057808259.1`
3	Chromosome	染色体	0.00000	`XP_057808259.1`
4	Centromere	着丝粒	0.00000	`XP_057808259.1`
5	Chromatin	染色质	0.00000	`XP_057808259.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:12183651`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B106,C81
`Chr4:12183653`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B33,B75,C48
`Chr4:12183684`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B106,B135,C58,C81,D10
`Chr4:12183698`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B134,B65,B77
`Chr4:12183701`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B128,B60,D1
`Chr4:12183717`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B33,B75,C48,C50
`Chr4:12183718`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C5
`Chr4:12183745`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr4:12183764`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B134,B65
`Chr4:12183765`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B139,B98,C18,C22,C44
`Chr4:12183787`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B33,B75,C48,C50
`Chr4:12183871`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B33,B75,C18,C48,C50

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057808259.1

509 aa

254

509

PPR

PPR_3

PPR

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PF01535 PPR 150-168 aa PF01535 PPR 217-246 aa PF13812 PPR_3 280-335 aa PF01535 PPR 297-320 aa PF13041 PPR_2 326-373 aa PF01535 PPR 329-357 aa PF13812 PPR_3 348-403 aa PF12854 PPR_1 357-389 aa PF13041 PPR_2 360-407 aa PF01535 PPR 364-392 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057808259.1`	Pfam	`PF01535`	PPR	Repeat	150	168	5.7e-27	92.8	PPR repeat
`XP_057808259.1`	Pfam	`PF01535`	PPR	Repeat	217	246	5.7e-27	92.8	PPR repeat
`XP_057808259.1`	Pfam	`PF13812`	PPR_3	Repeat	280	335	1.4e-18	67.4	Pentatricopeptide repeat domain
`XP_057808259.1`	Pfam	`PF01535`	PPR	Repeat	297	320	5.7e-27	92.8	PPR repeat
`XP_057808259.1`	Pfam	`PF13041`	PPR_2	Repeat	326	373	1e-36	125.5	PPR repeat family
`XP_057808259.1`	Pfam	`PF01535`	PPR	Repeat	329	357	5.7e-27	92.8	PPR repeat
`XP_057808259.1`	Pfam	`PF13812`	PPR_3	Repeat	348	403	1.4e-18	67.4	Pentatricopeptide repeat domain
`XP_057808259.1`	Pfam	`PF12854`	PPR_1	Repeat	357	389	1.4e-20	73.4	PPR repeat
`XP_057808259.1`	Pfam	`PF13041`	PPR_2	Repeat	360	407	1e-36	125.5	PPR repeat family
`XP_057808259.1`	Pfam	`PF01535`	PPR	Repeat	364	392	5.7e-27	92.8	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057952276.1
ATTCTTTTTGAAAAATGTTGTATTGGCTTTAACTATATTTGGGCACGATGTTGAAGAGAGTAAAGCGATTCATAGCAGCTCAAGAGATACATCCATGGCGGCACAAAATCTCTACAAATCAACCCACAATCAATCTGTTCCGCAACTCAGCTGCATCATTCTCATCTTCTTCTTCGCGCAATTTCTACATAAGAAAAAGAAGAAAGTGGCCAATTCAACCGCACAAGAAACAGCTGCCCGATTTTCTCGTTTTCCAATTA...

CDS

1 records

下载 CDS FASTA

LOC131022756
ATGTTGAAGAGAGTAAAGCGATTCATAGCAGCTCAAGAGATACATCCATGGCGGCACAAAATCTCTACAAATCAACCCACAATCAATCTGTTCCGCAACTCAGCTGCATCATTCTCATCTTCTTCTTCGCGCAATTTCTACATAAGAAAAAGAAGAAAGTGGCCAATTCAACCGCACAAGAAACAGCTGCCCGATTTTCTCGTTTTCCAATTAGCTAAGAAATCCTTCAAAAAATCGATCAAGAAATCCAAATCCCATAA...

Protein

1 records

下载 Protein FASTA

XP_057808259.1
MLKRVKRFIAAQEIHPWRHKISTNQPTINLFRNSAASFSSSSSRNFYIRKRRKWPIQPHKKQLPDFLVFQLAKKSFKKSIKKSKSHNLLPDLINACAAYEVEPSPQSYHFLFKILIQNRPANCRDQILQVLDHIEKFESFETPECVFVDLIKFYGENGMFDDAVELFSTTPRFRCEPSVETLNVLLSVLCKNEKGLEIVPKLLVKSQSMIIRIEESTFEILIRALCGIGDSSNALALLNQMVEEGFDLDQKVCSLMLATM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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