Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000945`

染色体: Chr04 坐标: 12503272-12513574 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000945`
名称	SmilChr04G000945
描述	regulatory-associated protein of TOR 1
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	12503272 - 12513574 / `-`

ID 对照

NCBI Gene ID	`LOC131022765`
GeneID	`131022765`
locus_tag	`-`
NCBI Name	`LOC131022765`
原始查询	`SmilChr04G000945`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	regulatory-associated protein of TOR 1
产物	regulatory-associated protein of TOR 1
Arabidopsis	`AT3G08850` (RAPTOR1) Regulatory-associated protein of TOR 1 [Source:NCBI gene (formerly Entrezgene);Acc:820032] identity=73.8; qcov=1.01; evalue=0; confidence=high
Rice	`Os12g0110000` (RAPTOR2) - identity=69.9; qcov=1; evalue=0; confidence=high
GO	GO:0005515 (protein binding); GO:0005737 (cytoplasm); GO:0009267 (cellular response to starvation); GO:0010506 (regulation of autophagy); GO:0030307 (positive regulation of cell growth); GO:0030674 (protein-macromolecule adaptor activity); GO:0031929 (TOR signaling); GO:0031931 (TORC1 complex); GO:0071230 (cellular response to amino acid stimulus); GO:0071902 (positive regulation of protein serine/threonine kinase activity)
KEGG	smil04136 (Autophagy - other - Salvia miltiorrhiza (redroot sage)); smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00400 (WD40); PF14538 (Raptor_N)
InterPro	-
eggNOG	-
NR	GeneID:131022765

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057808269.1`
2	Trans-golgi network	Trans-golgi network	0.40000	`XP_057808269.1`
3	Cytoplasmic vesicle	细胞质囊泡	0.20000	`XP_057808269.1`
4	Cytosol	细胞质基质	0.20000	`XP_057808269.1`
5	Golgi apparatus	高尔基体	0.20000	`XP_057808269.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:12503830`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr4:12503901`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B104,B124,B82,D10
`Chr4:12503988`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A1,B124,B41,C23,D11
`Chr4:12505201`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B53
`Chr4:12506578`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B80
`Chr4:12507148`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B117,B54
`Chr4:12507681`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr4:12509152`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B92
`Chr4:12509220`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B105
`Chr4:12510246`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr4:12511379`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr4:12512876`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057808269.1

1374 aa

687

1374

Raptor_N

WD40

PF14538 Raptor_N 114-265 aa PF00400 WD40 1090-1130 aa PF00400 WD40 1285-1319 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057808269.1`	Pfam	`PF14538`	Raptor_N	Domain	114	265	2.6e-71	239.0	Raptor N-terminal CASPase like domain
`XP_057808269.1`	Pfam	`PF00400`	WD40	Repeat	1090	1130	3e-16	59.8	WD domain, G-beta repeat
`XP_057808269.1`	Pfam	`PF00400`	WD40	Repeat	1285	1319	3e-16	59.8	WD domain, G-beta repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057952286.1
TACACTTGACATCTCCCCTCTTTGATTCTCTCTCTCTATTGTTTCTCTCTCTGTATATACATATGTATATCTACGCCTCCATCGACTCTTCCACCTGTCCCGCCGCCGTCACCGCCATCAGTTGCGACAGCGCCGCCTAGGGTTTTTCAGAGCTGGATTCTTTGTCATATCTTCTGCCCATCTCTCTACGCCGTTCCTTCACCGGCTTCGTCGACTAATCGCAGCCCGCTTCTTAAACCTAAATCCCGCACGCCCCATCT...

CDS

1 records

下载 CDS FASTA

LOC131022765
ATGGCATTGGGAGATTTGATGGCGGCATCACGGTTTTCACAGTCTACGACGGCGGTTTCGAATCACTTGGAGGAGTTCACCGAGAATGGGAATCATGTCGAGGAGGATGGCGAAAGGAGTGTTTATAGTAGCAGTAGCATTGTCAATAGTAACACCAATGCCCGTGATTTAACCGAGACCGCGAGCAGCAGCTATGCGGAAATGACCACCACGACGAGCATGGCTTACTTGCCGCAGACTATCGTGTTGTGTGAGCTCCG...

Protein

1 records

下载 Protein FASTA

XP_057808269.1
MALGDLMAASRFSQSTTAVSNHLEEFTENGNHVEEDGERSVYSSSSIVNSNTNARDLTETASSSYAEMTTTTSMAYLPQTIVLCELRHDGFEDCMPAGPSDSGLVSKWRPRDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGRTLNQQYERWQPKARYKYSLDPTVDEVKKLCTTCRKYAKSERVLFHYNGHGVPKPTPNGEIWLFNKSYTQYIPLPISDLDSWLKTPSIYVFDCSAAGL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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