当前解析结果
SmilChr04G000968| 统一新 Gene ID | SmilChr04G000968 |
|---|---|
| 名称 | SmilChr04G000968 |
| 描述 | uncharacterized SmilChr04G000968 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 12974883 - 12978450 / + |
| NCBI Gene ID | LOC131022778 |
|---|---|
| GeneID | 131022778 |
| locus_tag | - |
| NCBI Name | LOC131022778 |
| 原始查询 | SmilChr04G000968 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | saposin B domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:824336]; symbol=AT3G51730; hit=AT3G51730; species=arabidopsis; confidence=high |
| 产物 | saposin B domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:824336]; symbol=AT3G51730; hit=AT3G51730; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G51730 (AT3G51730)saposin B domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:824336] identity=52.4; qcov=0.76; evalue=1.63e-61; confidence=high |
| Rice | Os01g0166700- identity=45.4; qcov=0.828; evalue=3.51e-57; confidence=high |
| GO | GO:0005615 (GO:0005615); GO:0006629 (lipid metabolic process) |
| KEGG | smil00600 (Sphingolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF03489 (SapB_2); PF05184 (SapB_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022778 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057808284.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057808284.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057808284.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057808284.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057808284.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:12975967 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B117,B54 |
Chr4:12975969 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B124,B18,B79 |
Chr4:12975971 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr4:12975984 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B79,C38 |
Chr4:12976576 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B137,C19 |
Chr4:12977157 |
TA |
T |
1bp_deletion | frameshift_variant | 14 | B100,B135,B23,B41,B82,B85,B93,C10,C18,C48,C53,C74,C85,D5 |
Chr4:12977197 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B124,B18,B41,B79 |
Chr4:12977672 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B117,B54,B78 |
Chr4:12978179 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B113 |
Chr4:12978221 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
Chr4:12978224 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057808284.1PF05184
SapB_1 45-82 aa
PF03489
SapB_2 86-118 aa
PF05184
SapB_1 131-167 aa
PF03489
SapB_2 172-205 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808284.1 |
Pfam | PF05184 |
SapB_1 | Domain | 45 | 82 | 3.3e-23 | 82.0 | Saposin-like type B, region 1 |
XP_057808284.1 |
Pfam | PF03489 |
SapB_2 | Family | 86 | 118 | 1.1e-12 | 48.5 | Saposin-like type B, region 2 |
XP_057808284.1 |
Pfam | PF05184 |
SapB_1 | Domain | 131 | 167 | 3.3e-23 | 82.0 | Saposin-like type B, region 1 |
XP_057808284.1 |
Pfam | PF03489 |
SapB_2 | Family | 172 | 205 | 1.1e-12 | 48.5 | Saposin-like type B, region 2 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。