Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000979`

染色体: Chr04 坐标: 13182538-13187262 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000979`
名称	SmilChr04G000979
描述	uncharacterized SmilChr04G000979
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	13182538 - 13187262 / `+`

ID 对照

NCBI Gene ID	`LOC131023029`
GeneID	`131023029`
locus_tag	`-`
NCBI Name	`LOC131023029`
原始查询	`SmilChr04G000979`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os12g0142900; species=rice; confidence=medium
产物	hit=Os12g0142900; species=rice; confidence=medium
Arabidopsis	`ATMG00860` - identity=35.5; qcov=0.136; evalue=3.32e-23; confidence=weak
Rice	`Os12g0142900` - identity=36.3; qcov=0.49; evalue=1.21e-103; confidence=medium
GO	GO:0003676 (nucleic acid binding); GO:0004190 (aspartic-type endopeptidase activity); GO:0006508 (proteolysis); GO:0008270 (zinc ion binding)
KEGG	-
Pfam	PF00078 (RVT_1); PF00098 (zf-CCHC); PF03732 (PEG10_N-capsid); PF08284 (RVP_2); PF09668 (Asp_protease); PF13650 (Asp_protease_2); PF13975 (gag-asp_proteas); PF19259 (Ty3_capsid); PF24626 (SH3_Tf2-1); PF30863 (PRO_PEG10-RTL1)
InterPro	-
eggNOG	-
NR	GeneID:131023029

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057808549.1`
2	Cytosol	细胞质基质	0.80000	`XP_057808549.1`
3	Nucleus	细胞核	0.40000	`XP_057808549.1`
4	Chromosome	染色体	0.00000	`XP_057808549.1`
5	Centromere	着丝粒	0.00000	`XP_057808549.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:13182613`	`GAT`	`G`	2bp_deletion	frameshift_variant	6	B13,B135,B140,C19,C45,C6
`Chr4:13182646`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B1,C72
`Chr4:13182659`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B16,B65,B89,C34,C53
`Chr4:13182672`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr4:13182681`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C16,C34,C53
`Chr4:13182697`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr4:13182698`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B123,C73
`Chr4:13182699`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B101,B24,B53,D6
`Chr4:13182705`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C61,C78
`Chr4:13182736`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr4:13182737`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr4:13182795`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C61,C78

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057808549.1

1114 aa

557

1114

Ty3_capsid

PEG10_N-capsid

zf-CCHC

RVP_2

Asp_protease

Asp_protease_2

gag-asp_proteas

PRO_PEG10-RTL1

RVT_1

SH3_Tf2-1

PF19259 Ty3_capsid 31-195 aa PF03732 PEG10_N-capsid 35-113 aa PF00098 zf-CCHC 305-321 aa PF08284 RVP_2 349-478 aa PF09668 Asp_protease 371-466 aa PF13650 Asp_protease_2 372-458 aa PF13975 gag-asp_proteas 372-460 aa PF30863 PRO_PEG10-RTL1 380-478 aa PF00078 RVT_1 609-756 aa PF24626 SH3_Tf2-1 971-1036 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057808549.1`	Pfam	`PF19259`	Ty3_capsid	Domain	31	195	6.2e-10	39.5	Ty3 transposon capsid-like protein
`XP_057808549.1`	Pfam	`PF03732`	PEG10_N-capsid	Domain	35	113	2.3e-12	47.8	Retrotransposon-derived protein PEG10, N-terminal capsid-like domain
`XP_057808549.1`	Pfam	`PF00098`	zf-CCHC	Domain	305	321	1.1e-05	26.0	Zinc knuckle
`XP_057808549.1`	Pfam	`PF08284`	RVP_2	Domain	349	478	5.1e-30	104.8	Retroviral aspartyl protease
`XP_057808549.1`	Pfam	`PF09668`	Asp_protease	Domain	371	466	4.1e-09	37.3	Aspartyl protease
`XP_057808549.1`	Pfam	`PF13650`	Asp_protease_2	Domain	372	458	1e-09	39.7	Aspartyl protease
`XP_057808549.1`	Pfam	`PF13975`	gag-asp_proteas	Domain	372	460	1.2e-09	39.3	gag-polyprotein putative aspartyl protease
`XP_057808549.1`	Pfam	`PF30863`	PRO_PEG10-RTL1	Domain	380	478	2.5e-09	38.3	PEG10/RTL1 protease domain
`XP_057808549.1`	Pfam	`PF00078`	RVT_1	Domain	609	756	1.1e-33	117.6	Reverse transcriptase (RNA-dependent DNA polymerase)
`XP_057808549.1`	Pfam	`PF24626`	SH3_Tf2-1	Domain	971	1036	5.9e-28	97.5	Tf2-1-like, SH3 domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057952566.1
ATGACAACTAGAACTCGAGCTAGAAACAACGAAAATCCCGAGGGTGACGAACTAGTTAATCACATCCCAATCCGTGATATCGAAAACATGTTTAGAAAACAACACCCTCCAACTTTTGACGGCTTAGGCAATCCGTTAGATGCCGAAAAATGGGTTAGAGCGATAGAGCGAATATTTGCATATATAAGGTGTGAAGATCGTGAGAAGGTAATATATGCAAAATACCAGCTGATTGATGAAGCTGACTTTTGGTGGGAGTC...

CDS

1 records

下载 CDS FASTA

LOC131023029
ATGACAACTAGAACTCGAGCTAGAAACAACGAAAATCCCGAGGGTGACGAACTAGTTAATCACATCCCAATCCGTGATATCGAAAACATGTTTAGAAAACAACACCCTCCAACTTTTGACGGCTTAGGCAATCCGTTAGATGCCGAAAAATGGGTTAGAGCGATAGAGCGAATATTTGCATATATAAGGTGTGAAGATCGTGAGAAGGTAATATATGCAAAATACCAGCTGATTGATGAAGCTGACTTTTGGTGGGAGTC...

Protein

1 records

下载 Protein FASTA

XP_057808549.1
MTTRTRARNNENPEGDELVNHIPIRDIENMFRKQHPPTFDGLGNPLDAEKWVRAIERIFAYIRCEDREKVIYAKYQLIDEADFWWESVERTMTQAQKDTLTWEGFKEKLFEKFIPECYRQKRQNEFWNLRQGKSMVTEYDRAFNRLSRYYPQLVDTDEKKADRFRKGLRPEIAVSLASQGTLTYAQSLTRALNIETLLPKEREKGAIQQFEGDRGKRKWEDRASGEEIVKKGFWRGPPQQQFLPQQLQQQQFQPRQPQQQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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