当前解析结果
SmilChr04G000981| 统一新 Gene ID | SmilChr04G000981 |
|---|---|
| 名称 | SmilChr04G000981 |
| 描述 | probable serine/threonine-protein kinase WNK5 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 13215837 - 13221643 / - |
| NCBI Gene ID | LOC131020091 |
|---|---|
| GeneID | 131020091 |
| locus_tag | - |
| NCBI Name | LOC131020091 |
| 原始查询 | SmilChr04G000981 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable serine/threonine-protein kinase WNK5 |
| 产物 | probable serine/threonine-protein kinase WNK5 |
| Arabidopsis | AT5G58350 (WNK4)with no lysine (K) kinase 4 [Source:NCBI gene (formerly Entrezgene);Acc:835947] identity=52.8; qcov=0.985; evalue=0; confidence=high |
| Rice | Os12g0114100 (OsWNK8)- identity=62.4; qcov=0.668; evalue=3.16e-162; confidence=high |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0006468 (protein phosphorylation); GO:0035556 (intracellular signal transduction) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020091 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057804729.1 |
| 2 | Cell membrane | 细胞膜 | 0.80000 | XP_057804729.1 |
| 3 | Cytoplasm | 细胞质 | 0.60000 | XP_057804729.1 |
| 4 | Nucleus | 细胞核 | 0.20000 | XP_057804729.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057804729.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:13216253 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C11,D10 |
Chr4:13216789 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B112 |
Chr4:13216816 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B18 |
Chr4:13216830 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr4:13217235 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B59 |
Chr4:13217265 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:13217381 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C19 |
Chr4:13217404 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B74 |
Chr4:13217626 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B101,B108,B27,C43 |
Chr4:13217710 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr4:13217971 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B124,B79,D11 |
Chr4:13220949 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057804729.1PF07714
PK_Tyr_Ser-Thr 29-281 aa
PF00069
Pkinase 30-285 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804729.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 29 | 281 | 2.7e-33 | 116.1 | Protein tyrosine and serine/threonine kinase |
XP_057804729.1 |
Pfam | PF00069 |
Pkinase | Domain | 30 | 285 | 1.3e-50 | 173.0 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。