Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000982`

染色体: Chr04 坐标: 13231266-13238140 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000982`
名称	SmilChr04G000982
描述	uncharacterized SmilChr04G000982
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	13231266 - 13238140 / `-`

ID 对照

NCBI Gene ID	`LOC131021175`
GeneID	`131021175`
locus_tag	`-`
NCBI Name	`LOC131021175`
原始查询	`SmilChr04G000982`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	PAP/OAS1 substrate-binding domain superfamily [Source:NCBI gene (formerly Entrezgene);Acc:824325]; symbol=AT3G51620; hit=AT3G51620; species=arabidopsis; confidence=medium
产物	PAP/OAS1 substrate-binding domain superfamily [Source:NCBI gene (formerly Entrezgene);Acc:824325]; symbol=AT3G51620; hit=AT3G51620; species=arabidopsis; confidence=medium
Arabidopsis	`AT3G51620` (AT3G51620) PAP/OAS1 substrate-binding domain superfamily [Source:NCBI gene (formerly Entrezgene);Acc:824325] identity=44.8; qcov=1.06; evalue=0; confidence=medium
Rice	`Os11g0114700` (OsNTP11) - identity=40.8; qcov=1.07; evalue=1.11e-149; confidence=medium
GO	-
KEGG	-
Pfam	PF22600 (MTPAP-like_central); PF26180 (PAP-OAS1)
InterPro	-
eggNOG	-
NR	GeneID:131021175

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057806248.1`
2	Nucleus	细胞核	0.20000	`XP_057806248.1`
3	Cytoplasmic granule	细胞质颗粒	0.20000	`XP_057806249.1`
4	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.20000	`XP_057806249.1`
5	P-body	P-body	0.20000	`XP_057806249.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:13231673`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A3,B115,B59,B78
`Chr4:13231819`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr4:13231880`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B124,B79
`Chr4:13231895`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B124,B79
`Chr4:13232039`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B97
`Chr4:13232089`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B124,B79
`Chr4:13232136`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B120,B62
`Chr4:13232493`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:13232634`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B67
`Chr4:13232652`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C23
`Chr4:13232687`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B124,B79
`Chr4:13232717`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B18

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806248.1

808 aa

404

808

MTPAP-like_central

PAP-OAS1

PF22600 MTPAP-like_central 44-163 aa PF26180 PAP-OAS1 176-368 aa

XP_057806249.1

731 aa

366

731

PAP-OAS1

PF26180 PAP-OAS1 99-291 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806248.1`	Pfam	`PF22600`	MTPAP-like_central	Domain	44	163	1.4e-08	35.6	Poly(A) RNA polymerase, mitochondrial-like, central palm domain
`XP_057806248.1`	Pfam	`PF26180`	PAP-OAS1	Domain	176	368	8.7e-98	326.5	PAP/OAS1 substrate-binding domain
`XP_057806249.1`	Pfam	`PF26180`	PAP-OAS1	Domain	99	291	7.2e-98	326.8	PAP/OAS1 substrate-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057950265.1
AGGGTTAGTAATAGTAAATTCCCTTTAACACAAAATCATGTGTAAGAGAAGAGAGGGAAAAAAATTAAGAGCATCGTAATCGGCGGTAAATAATAATGAAAAATTAATGTAATTCGTGTTGCAATCATCTGCAGTTGGTAGTATAATATTTATGTCATTTGTTTATATAAATTCGGAAAATCCAAAACCAAATTCACACAGATTTTCGCGTTTTTTCGTCTCTGCTGTTTCTTGTTTCTTGCTCGGACCTAACACAACAG...

XM_057950266.1
TTTTTGTGTTTATCTTTTTTGACAGATTTTTACTCCTTCATGCATTTTATGCTATGTTTTGCTACTGGTTTGAGAAATCTATATGCATTGTTATGCACTTATGGTGATTGTCTGATGAGGATTCTTGCATCTAGAGATGTTAGATAGATAGTGGCACTCGCTATATGCTATGTTATCGACTTATGGTGATTGCTTGATGAGAAACCTTGCGTTAAGAATGGTAGGTAACGGCTCTCTCTATGTGCTATTCTATCGACTTA...

CDS

2 records

下载 CDS FASTA

LOC131021175
ATGGGTGATCTCCCGGTTGGCGGCGGACCGGCGGAGATGAATCCTGTGGCTTCACATTCGCCGCCATTCGCTGAGCCGAGCCGGTTGGAGATTGGGGCAGGAAATTGGGCGGCGGCTGAGAGAGCGGCGGCTGAGATAATCAGGAAGGTACAGCCCACTCCTGTATCAGAGGAGAGGAGAAAAGAAGTGGTTGATTATATTCAGAGATTAATCAGGGATTGTGTTGGTGCTGAGGTCTTCCCCTATGGATCTGTGCCACT...

LOC131021175
ATGGTCTTCCCCTATGGATCTGTGCCACTGAAAACTTATCTTCCGGACGGAGACATTGATTTAACCGCCTTTGGTGGTGCAAATGTTGAAGATACTTTGGCTGATGAAATGAAATCTGTATTAGAAGAAGAAGAGAGAAATATAGGCGCCGAATTTGTAGTAAAGGATGTCCAACTCATCCGCGCCGAGGTTAAGCTTGTGAAATGTATTGTTCAGGATATCGTAGTTGACATATCGTTTAATCAAATTGGGGGGCTTTG...

Protein

2 records

下载 Protein FASTA

XP_057806248.1
MGDLPVGGGPAEMNPVASHSPPFAEPSRLEIGAGNWAAAERAAAEIIRKVQPTPVSEERRKEVVDYIQRLIRDCVGAEVFPYGSVPLKTYLPDGDIDLTAFGGANVEDTLADEMKSVLEEEERNIGAEFVVKDVQLIRAEVKLVKCIVQDIVVDISFNQIGGLCTLCFLEQVDRLIGRDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLYHSALDGPLAVLYKFLDYFSKFDWDAYCVSLNGVVRLS...

XP_057806249.1
MVFPYGSVPLKTYLPDGDIDLTAFGGANVEDTLADEMKSVLEEEERNIGAEFVVKDVQLIRAEVKLVKCIVQDIVVDISFNQIGGLCTLCFLEQVDRLIGRDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLYHSALDGPLAVLYKFLDYFSKFDWDAYCVSLNGVVRLSSLPSFVVEIPEDSDKDLLLSNDFLNNCVDMFSVPSRVGDKTPRVFPRKHLNIVDPLKEINNLGRSVSKGNFYRIRSA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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