当前解析结果
SmilChr04G000989| 统一新 Gene ID | SmilChr04G000989 |
|---|---|
| 名称 | SmilChr04G000989 |
| 描述 | secreted RxLR effector protein 161-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 13425042 - 13425779 / - |
| NCBI Gene ID | LOC131023033 |
|---|---|
| GeneID | 131023033 |
| locus_tag | - |
| NCBI Name | LOC131023033 |
| 原始查询 | SmilChr04G000989 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | secreted RxLR effector protein 161-like |
| 产物 | secreted RxLR effector protein 161-like |
| Arabidopsis | AT4G23160 (CRK8)cysteine-rich RECEPTOR-like kinase [Source:NCBI gene (formerly Entrezgene);Acc:828415] identity=35.8; qcov=0.731; evalue=3.71e-27; confidence=medium |
| Rice | Os08g0125300- identity=39; qcov=0.91; evalue=8.76e-39; confidence=medium |
| GO | GO:0003676 (nucleic acid binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023033 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057808554.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057808554.1 |
| 3 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057808554.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057808554.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057808554.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:13425299 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B80 |
Chr4:13425305 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B133,B36,B86,C25,C63 |
Chr4:13425312 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B30,C27,C5 |
Chr4:13425454 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr4:13425463 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B85,B91,C35 |
Chr4:13425501 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B85,C45 |
Chr4:13425525 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B85,C30,C45 |
Chr4:13425556 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B24,B80,C37 |
Chr4:13425563 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A3 |
Chr4:13425565 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B85,C30,C45 |
Chr4:13425569 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B24,B80,C37 |
Chr4:13425580 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B127,C16 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。