Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001005`

染色体: Chr04 坐标: 14006924-14011746 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001005`
名称	SmilChr04G001005
描述	protein DETOXIFICATION 53-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	14006924 - 14011746 / `+`

ID 对照

NCBI Gene ID	`LOC131019743`
GeneID	`131019743`
locus_tag	`-`
NCBI Name	`LOC131019743`
原始查询	`SmilChr04G001005`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein DETOXIFICATION 53-like
产物	protein DETOXIFICATION 53-like
Arabidopsis	`AT2G38510` (AT2G38510) MATE efflux family protein [Source:NCBI gene (formerly Entrezgene);Acc:818433] identity=57.1; qcov=0.872; evalue=0; confidence=high
Rice	`Os02g0676400` - identity=47.6; qcov=0.87; evalue=4.48e-139; confidence=high
GO	GO:0015297 (antiporter activity); GO:0016020 (membrane); GO:0042910 (xenobiotic transmembrane transporter activity); GO:1990961 (xenobiotic detoxification by transmembrane export across the plasma membrane)
KEGG	-
Pfam	PF01554 (MatE)
InterPro	-
eggNOG	-
NR	GeneID:131019743

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057804311.1`
2	Vacuole	液泡	0.40000	`XP_057804311.1`
3	Vacuole membrane	液泡膜	0.40000	`XP_057804311.1`
4	Nucleus	细胞核	0.00000	`XP_057804311.1`
5	Chromosome	染色体	0.00000	`XP_057804311.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:14007330`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr4:14009978`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr4:14010178`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A18,B1,B108,B24
`Chr4:14011142`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B101,B126,B27,B51,B54
`Chr4:14011274`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A1
`Chr4:14011328`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B119,B16,B24
`Chr4:14011353`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B30,B81
`Chr4:14011368`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A5,B48

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804311.1

524 aa

262

524

MatE

PF01554 MatE 72-231 aa PF01554 MatE 294-455 aa

XP_057804312.1

524 aa

262

524

MatE

PF01554 MatE 72-231 aa PF01554 MatE 294-455 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804311.1`	Pfam	`PF01554`	MatE	Family	72	231	4.2e-59	199.6	MatE
`XP_057804311.1`	Pfam	`PF01554`	MatE	Family	294	455	4.2e-59	199.6	MatE
`XP_057804312.1`	Pfam	`PF01554`	MatE	Family	72	231	4.2e-59	199.6	MatE
`XP_057804312.1`	Pfam	`PF01554`	MatE	Family	294	455	4.2e-59	199.6	MatE

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057948328.1
CCCTCTCTATAAATATGCGTGTGCACAAGTAAGAATATGTCACTTGTAATGTCTCACTGCGTTCTTCATTCTTTTTCTGGTCTTCCAAGCAGACTGATATGTACTGAAATAGGACACAAATTTTGCTGAAATTAAGCAGTCATGTGCAAAATGAGTGAATCTCGAGAACTCGAGCTTCCCGACTTTAATGGCGGCGGCGGCGATGACGGCGGCGGCGACATCAAATTCGACGAAATCAGCCATGATGCAATGACGGCTGC...

XM_057948329.1
CCCTCTCTATAAATATGCGTGTGCACAAGTAAGAATATGTCACTTGTAATGTCTCACTGCGTTCTTCATTCTTTTTCTGGTCTTCCAAGCAGACTGATATGTACTGAAATAGGACACAAATTTTGCTGAAATTAAGTCATGTGCAAAATGAGTGAATCTCGAGAACTCGAGCTTCCCGACTTTAATGGCGGCGGCGGCGATGACGGCGGCGGCGACATCAAATTCGACGAAATCAGCCATGATGCAATGACGGCTGCAGA...

CDS

2 records

下载 CDS FASTA

LOC131019743
ATGTGCAAAATGAGTGAATCTCGAGAACTCGAGCTTCCCGACTTTAATGGCGGCGGCGGCGATGACGGCGGCGGCGACATCAAATTCGACGAAATCAGCCATGATGCAATGACGGCTGCAGAAGATAGACATAGATCGTTTTGCTGTTTTTTTCAACGAGTGCCTTTAAACGAGGTAGTGGAAGAGCTGTTGTCATTGGGTAAGATCGCATGCCCCGTGGCACTGACCACACTCCTCTACTTCTCGAAGACCATAATCTC...

Protein

2 records

下载 Protein FASTA

XP_057804311.1
MCKMSESRELELPDFNGGGGDDGGGDIKFDEISHDAMTAAEDRHRSFCCFFQRVPLNEVVEELLSLGKIACPVALTTLLYFSKTIISMLFLGHMEKAELAGGSLAVGFANVTGFSVMKGLCTGMDPICCQAYGARRWPVLTQTYLKTVVLLLVVTIPMAVLWLNVDTVFHRLGQDHTITKIAKNYLLFSLPELFTHANLVPLRTFLRTQGLNSPNTLVATCVSIMHLPVTYFLVTYLNLRVKGIALASVIYSVNMNLGLW...

XP_057804312.1
MCKMSESRELELPDFNGGGGDDGGGDIKFDEISHDAMTAAEDRHRSFCCFFQRVPLNEVVEELLSLGKIACPVALTTLLYFSKTIISMLFLGHMEKAELAGGSLAVGFANVTGFSVMKGLCTGMDPICCQAYGARRWPVLTQTYLKTVVLLLVVTIPMAVLWLNVDTVFHRLGQDHTITKIAKNYLLFSLPELFTHANLVPLRTFLRTQGLNSPNTLVATCVSIMHLPVTYFLVTYLNLRVKGIALASVIYSVNMNLGLW...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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