Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001063`

染色体: Chr04 坐标: 15214415-15216315 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001063`
名称	SmilChr04G001063
描述	uncharacterized SmilChr04G001063
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	15214415 - 15216315 / `-`

ID 对照

NCBI Gene ID	`LOC131019805`
GeneID	`131019805`
locus_tag	`-`
NCBI Name	`LOC131019805`
原始查询	`SmilChr04G001063`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831911]; symbol=AT5G01980; hit=AT5G01980; species=arabidopsis; confidence=medium
产物	RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831911]; symbol=AT5G01980; hit=AT5G01980; species=arabidopsis; confidence=medium
Arabidopsis	`AT5G01980` (AT5G01980) RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831911] identity=39; qcov=1.14; evalue=2.34e-82; confidence=medium
Rice	`Os12g0118700` - identity=33.8; qcov=1.13; evalue=3.03e-70; confidence=low
GO	GO:0005737 (cytoplasm); GO:0016567 (protein ubiquitination); GO:0061630 (ubiquitin protein ligase activity)
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2)
InterPro	-
eggNOG	-
NR	GeneID:131019805

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.60000	`XP_057804379.1`
2	Cytoplasm	细胞质	0.60000	`XP_057804379.1`
3	Endoplasmic reticulum	内质网	0.20000	`XP_057804379.1`
4	Endoplasmic reticulum membrane	内质网膜	0.20000	`XP_057804379.1`
5	Lipid droplet	脂滴	0.20000	`XP_057804379.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:15214661`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:15214884`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C16,C62,D3
`Chr4:15215395`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:15215838`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B113,B117

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804379.1

433 aa

216

433

zf-RING_2

zf-C3HC4_2

zf-C3HC4

PF13639 zf-RING_2 286-329 aa PF13923 zf-C3HC4_2 287-328 aa PF00097 zf-C3HC4 288-328 aa

XP_057804380.1

433 aa

216

433

zf-RING_2

zf-C3HC4_2

zf-C3HC4

PF13639 zf-RING_2 286-329 aa PF13923 zf-C3HC4_2 287-328 aa PF00097 zf-C3HC4 288-328 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804379.1`	Pfam	`PF13639`	zf-RING_2	Domain	286	329	3.1e-11	44.0	Ring finger domain
`XP_057804379.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	287	328	1.3e-08	35.2	Zinc finger, C3HC4 type (RING finger)
`XP_057804379.1`	Pfam	`PF00097`	zf-C3HC4	Domain	288	328	9.6e-06	26.1	Zinc finger, C3HC4 type (RING finger)
`XP_057804380.1`	Pfam	`PF13639`	zf-RING_2	Domain	286	329	3.1e-11	44.0	Ring finger domain
`XP_057804380.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	287	328	1.3e-08	35.2	Zinc finger, C3HC4 type (RING finger)
`XP_057804380.1`	Pfam	`PF00097`	zf-C3HC4	Domain	288	328	9.6e-06	26.1	Zinc finger, C3HC4 type (RING finger)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057948396.1
GGGTCAGTAAGTCGCACAACTCAACCACCATTTATTCCTGAATTTGTCAATTTCTGGCTTTTTCTTTCCCTCTTTATCTTTTCATTTCTACCTCCGTTCCTTTTTTTTCTTCTTTCTCATTCACAGTGCTTTTGGTCTTCCGTCGCCCACCACCACCATATCTATGTATCAGTTGTGAATGGATATGGAATCTCGGAGTAATTTGGGGGATTCCTCCTCTTGTGCTTTATGCCATAGAATTCTTTCATCGGACAATGAGG...

XM_057948397.1
AACCACCATTTATTCCTGAATTTGTCAATTTCTGGCTTTTTCTTTCCCTCTTTATCTTTTCATTTCTACCTCCGTTCCTTTTTTTTCTTCTTTCTCATTCACAGTGCTTTTGGTCTTCCGTCGCCCACCACCACCATATCTATGTATCAGGTATATCGCGCTCTCTCTCTCCACCGCCCCCAATCGGATCTAGCTGCCCTACTCCGACCTCGAATTTTCTTCAACGCTTTAATCTTTCCGATTATTGATTGTGAATGAGT...

CDS

2 records

下载 CDS FASTA

LOC131019805
ATGGATATGGAATCTCGGAGTAATTTGGGGGATTCCTCCTCTTGTGCTTTATGCCATAGAATTCTTTCATCGGACAATGAGGCTGACGAGATTGACGCTATCAGTGTATGCGGTGATTGCAAATTTTTGTTGCTGGAAGATTTCGACACGGCCTCGGCCTCGGCCTCGCCTGATGTGTATCGTAGGAGAAGGAGTGTATCAAGGAGAAGATTCGACAGCTCTGAGTCCATGGAGAGTATGTTCTCGCAGCAATTTTCACA...

Protein

2 records

下载 Protein FASTA

XP_057804379.1
MDMESRSNLGDSSSCALCHRILSSDNEADEIDAISVCGDCKFLLLEDFDTASASASPDVYRRRRSVSRRRFDSSESMESMFSQQFSQMISLAARQNPSSDDAHSVEGVRQSQSGSRRWRRVLSDTESEGFDSLYGESESNASFRRYRAVHDSDSDASVDARSEIDSDSDNDIDPMNAGTFQWNSEDDSEAEAQPNVFINWRSPPRVMGTFPLSIRQRIQAHTGDLLTNLEESYVGNSGDYLDARGFEDLLDHLAESESSR...

XP_057804380.1
MDMESRSNLGDSSSCALCHRILSSDNEADEIDAISVCGDCKFLLLEDFDTASASASPDVYRRRRSVSRRRFDSSESMESMFSQQFSQMISLAARQNPSSDDAHSVEGVRQSQSGSRRWRRVLSDTESEGFDSLYGESESNASFRRYRAVHDSDSDASVDARSEIDSDSDNDIDPMNAGTFQWNSEDDSEAEAQPNVFINWRSPPRVMGTFPLSIRQRIQAHTGDLLTNLEESYVGNSGDYLDARGFEDLLDHLAESESSR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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