当前解析结果
SmilChr04G001069| 统一新 Gene ID | SmilChr04G001069 |
|---|---|
| 名称 | SmilChr04G001069 |
| 描述 | uncharacterized SmilChr04G001069 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 15354434 - 15357042 / - |
| NCBI Gene ID | LOC131019797 |
|---|---|
| GeneID | 131019797 |
| locus_tag | - |
| NCBI Name | LOC131019797 |
| 原始查询 | SmilChr04G001069 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0292200; species=rice; confidence=weak |
| 产物 | hit=Os12g0292200; species=rice; confidence=weak |
| Arabidopsis | -- |
| Rice | Os12g0292200- identity=30.8; qcov=0.123; evalue=6.18e-06; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019797 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057804364.1 |
| 2 | Cytoplasmic granule | 细胞质颗粒 | 0.60000 | XP_057804364.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057804364.1 |
| 4 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.20000 | XP_057804364.1 |
| 5 | P-body | P-body | 0.20000 | XP_057804364.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:15354612 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C72 |
Chr4:15354629 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B80 |
Chr4:15354632 |
TG |
T |
1bp_deletion | frameshift_variant | 19 | A10,A18,B18,B23,B3,B41,B85,B87,B94,C1,C21,C43,C49,C54,C55,C68,C78,C8,D6 |
Chr4:15354645 |
G |
A |
EMS_canonical_SNV | stop_gained | 17 | B134,B135,B137,B15,B21,B41,B64,B66,B88,C12,C24,C26,C50,C56,C69,C7,D9 |
Chr4:15354670 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B125,B138,B45 |
Chr4:15354684 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B89,D7 |
Chr4:15354685 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A23,D10 |
Chr4:15354721 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B118,B83,C76 |
Chr4:15354728 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A23,B48 |
Chr4:15354740 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B37 |
Chr4:15354757 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B102,B39,D11 |
Chr4:15354760 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A15,A20,B91,C63,C67 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。