当前解析结果
SmilChr04G001071| 统一新 Gene ID | SmilChr04G001071 |
|---|---|
| 名称 | SmilChr04G001071 |
| 描述 | probable LRR receptor-like serine/threonine-protein kinase At1g06840 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 15413781 - 15418886 / - |
| NCBI Gene ID | LOC131019793 |
|---|---|
| GeneID | 131019793 |
| locus_tag | - |
| NCBI Name | LOC131019793 |
| 原始查询 | SmilChr04G001071 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable LRR receptor-like serine/threonine-protein kinase At1g06840 |
| 产物 | probable LRR receptor-like serine/threonine-protein kinase At1g06840 |
| Arabidopsis | AT1G06840 (AT1G06840)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837196] identity=53.2; qcov=0.992; evalue=0; confidence=high |
| Rice | Os01g0960400 (P0401G10.25-1)- identity=54.2; qcov=1.02; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019793 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057804352.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057804352.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057804352.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057804352.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057804352.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:15413956 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C85 |
Chr4:15414063 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C43 |
Chr4:15414482 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B101,B108,B27,C43,D11 |
Chr4:15414631 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B67,C16,C62,D3 |
Chr4:15414699 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | C83 |
Chr4:15414699 |
AT |
A |
1bp_deletion | CDS_variant | 1 | C83 |
Chr4:15415078 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr4:15415107 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr4:15415197 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A13,C13 |
Chr4:15415404 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B120,B62,D11 |
Chr4:15415701 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr4:15416021 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057804352.1PF08263
LRRNT_2 28-66 aa
PF00560
LRR_1 125-146 aa
PF00560
LRR_1 173-194 aa
PF00560
LRR_1 291-313 aa
PF00560
LRR_1 315-335 aa
PF07714
PK_Tyr_Ser-Thr 627-894 aa
PF00069
Pkinase 629-892 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804352.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 28 | 66 | 1.2e-05 | 26.2 | Leucine rich repeat N-terminal domain |
XP_057804352.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 125 | 146 | 2.2e-19 | 66.1 | Leucine Rich Repeat |
XP_057804352.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 173 | 194 | 2.2e-19 | 66.1 | Leucine Rich Repeat |
XP_057804352.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 291 | 313 | 2.2e-19 | 66.1 | Leucine Rich Repeat |
XP_057804352.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 315 | 335 | 2.2e-19 | 66.1 | Leucine Rich Repeat |
XP_057804352.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 627 | 894 | 9.2e-48 | 163.5 | Protein tyrosine and serine/threonine kinase |
XP_057804352.1 |
Pfam | PF00069 |
Pkinase | Domain | 629 | 892 | 1.2e-48 | 166.6 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。