Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001078`

染色体: Chr04 坐标: 15465308-15468818 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001078`
名称	SmilChr04G001078
描述	26S proteasome regulatory subunit 6B homolog
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	15465308 - 15468818 / `+`

ID 对照

NCBI Gene ID	`LOC131019807`
GeneID	`131019807`
locus_tag	`-`
NCBI Name	`LOC131019807`
原始查询	`SmilChr04G001078`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	26S proteasome regulatory subunit 6B homolog
产物	26S proteasome regulatory subunit 6B homolog
Arabidopsis	`AT5G58290` (RPT3) regulatory particle triple-A ATPase 3 [Source:NCBI gene (formerly Entrezgene);Acc:835941] identity=92.5; qcov=0.998; evalue=0; confidence=high
Rice	`Os02g0325100` (OsRpt3) - identity=95.3; qcov=0.923; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0008540 (proteasome regulatory particle, base subcomplex); GO:0016887 (ATP hydrolysis activity); GO:0036402 (proteasome-activating activity); GO:0043161 (proteasome-mediated ubiquitin-dependent protein catabolic process)
KEGG	smil03050 (Proteasome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00004 (AAA); PF07724 (AAA_2); PF07728 (AAA_5); PF16450 (Prot_ATP_ID_OB_C); PF17862 (AAA_lid_3)
InterPro	-
eggNOG	-
NR	GeneID:131019807

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057804383.1`
2	Nucleus	细胞核	0.80000	`XP_057804383.1`
3	Cytosol	细胞质基质	0.40000	`XP_057804383.1`
4	Chromosome	染色体	0.00000	`XP_057804383.1`
5	Centromere	着丝粒	0.00000	`XP_057804383.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:15465648`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:15465733`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C44
`Chr4:15465814`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr4:15466035`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C81,C82
`Chr4:15466847`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B58

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804383.1

415 aa

208

415

Prot_ATP_ID_OB_C

AAA_5

AAA_2

AAA

AAA_lid_3

PF16450 Prot_ATP_ID_OB_C 86-141 aa PF07728 AAA_5 198-320 aa PF07724 AAA_2 199-292 aa PF00004 AAA 199-332 aa PF17862 AAA_lid_3 355-398 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804383.1`	Pfam	`PF16450`	Prot_ATP_ID_OB_C	Domain	86	141	5.5e-13	49.3	Proteasomal ATPase OB C-terminal domain
`XP_057804383.1`	Pfam	`PF07728`	AAA_5	Domain	198	320	2.2e-08	34.9	AAA domain (dynein-related subfamily)
`XP_057804383.1`	Pfam	`PF07724`	AAA_2	Domain	199	292	9.4e-07	29.7	AAA domain (Cdc48 subfamily)
`XP_057804383.1`	Pfam	`PF00004`	AAA	Domain	199	332	9.6e-46	156.2	ATPase family associated with various cellular activities (AAA)
`XP_057804383.1`	Pfam	`PF17862`	AAA_lid_3	Domain	355	398	3.8e-07	30.3	AAA+ lid domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057948400.1
ACTAATTTACACATTATTCTTAATTTTCGTGTTGAAAAAGAAATGAAACAAAGAATGAGACGGGGAGGAAATATTAAGAACCATCAAGTATTGTTCTTTGGGCCTCCCTTGTTGATTGTGGACCTTTTACCCACAACTCGTTAAGTAAAGACTTTGAGAAAAGCCCATAGTTTAATATGTAAATATGAGGCCCAAATCCAAAAAATTCTTTCTCCTCTCGATGTTTTCGTCTTCAGCAAGGCAGCAACTGTAAAAGAGTA...

CDS

1 records

下载 CDS FASTA

LOC131019807
ATGGCAGCGACGGCAATGGTGCTCGATCCGAAGCCTGTGCCCACCTCAGAACCGCCGCCGTCTCATCCGGCCATCAAATCTGATGTTCTCGCCGTCGAGGAGGAGGATTTGTACGGGCGGCTGAAATCCTTGCAGCGGCAGATCGAATTCATCGATATCCAAGAGGAGTACGTCAAGGACGAACTGAAAAACCTAAAGCGGGAGCTTCTGAGGGCGCAGGAGGAGGTGAAGCGGATTCAATCTGTGCCCTTGGTTATTGG...

Protein

1 records

下载 Protein FASTA

XP_057804383.1
MAATAMVLDPKPVPTSEPPPSHPAIKSDVLAVEEEDLYGRLKSLQRQIEFIDIQEEYVKDELKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYTDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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