Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001083`

染色体: Chr04 坐标: 15541442-15544605 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001083`
名称	SmilChr04G001083
描述	probable inactive receptor kinase At5g58300
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	15541442 - 15544605 / `+`

ID 对照

NCBI Gene ID	`LOC131019795`
GeneID	`131019795`
locus_tag	`-`
NCBI Name	`LOC131019795`
原始查询	`SmilChr04G001083`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable inactive receptor kinase At5g58300
产物	probable inactive receptor kinase At5g58300
Arabidopsis	`AT5G58300` (AT5G58300) Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:835942] identity=56.3; qcov=0.979; evalue=0; confidence=high
Rice	`Os03g0332900` - identity=55.5; qcov=0.955; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2)
InterPro	-
eggNOG	-
NR	GeneID:131019795

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057804355.1`
2	Nucleus	细胞核	0.00000	`XP_057804355.1`
3	Chromosome	染色体	0.00000	`XP_057804355.1`
4	Centromere	着丝粒	0.00000	`XP_057804355.1`
5	Chromatin	染色质	0.00000	`XP_057804355.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:15542621`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B139,B98,C18,C22
`Chr4:15542768`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A1
`Chr4:15542800`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr4:15543391`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B139,B98,C18,C22,C44
`Chr4:15543714`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C16,C62,D3
`Chr4:15543750`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr4:15544254`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804355.1

690 aa

345

690

LRRNT_2

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 33-70 aa PF00560 LRR_1 100-122 aa PF00560 LRR_1 147-168 aa PF00560 LRR_1 193-213 aa PF00069 Pkinase 378-666 aa PF07714 PK_Tyr_Ser-Thr 378-667 aa

XP_057804356.1

690 aa

345

690

LRRNT_2

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 33-70 aa PF00560 LRR_1 100-122 aa PF00560 LRR_1 147-168 aa PF00560 LRR_1 193-213 aa PF00069 Pkinase 378-666 aa PF07714 PK_Tyr_Ser-Thr 378-667 aa

XP_057804357.1

664 aa

332

664

LRRNT_2

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 33-70 aa PF00560 LRR_1 100-122 aa PF00560 LRR_1 147-168 aa PF00560 LRR_1 193-213 aa PF00069 Pkinase 378-640 aa PF07714 PK_Tyr_Ser-Thr 378-641 aa

XP_057804359.1

664 aa

332

664

LRRNT_2

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 33-70 aa PF00560 LRR_1 100-122 aa PF00560 LRR_1 147-168 aa PF00560 LRR_1 193-213 aa PF00069 Pkinase 378-640 aa PF07714 PK_Tyr_Ser-Thr 378-641 aa

XP_057804360.1

664 aa

332

664

LRRNT_2

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 33-70 aa PF00560 LRR_1 100-122 aa PF00560 LRR_1 147-168 aa PF00560 LRR_1 193-213 aa PF00069 Pkinase 378-640 aa PF07714 PK_Tyr_Ser-Thr 378-641 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804355.1`	Pfam	`PF08263`	LRRNT_2	Family	33	70	4.7e-09	37.1	Leucine rich repeat N-terminal domain
`XP_057804355.1`	Pfam	`PF00560`	LRR_1	Repeat	100	122	1.8e-10	39.6	Leucine Rich Repeat
`XP_057804355.1`	Pfam	`PF00560`	LRR_1	Repeat	147	168	1.8e-10	39.6	Leucine Rich Repeat
`XP_057804355.1`	Pfam	`PF00560`	LRR_1	Repeat	193	213	1.8e-10	39.6	Leucine Rich Repeat
`XP_057804355.1`	Pfam	`PF00069`	Pkinase	Domain	378	666	8.9e-32	111.2	Protein kinase domain
`XP_057804355.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	378	667	3.9e-33	115.6	Protein tyrosine and serine/threonine kinase
`XP_057804356.1`	Pfam	`PF08263`	LRRNT_2	Family	33	70	4.7e-09	37.1	Leucine rich repeat N-terminal domain
`XP_057804356.1`	Pfam	`PF00560`	LRR_1	Repeat	100	122	1.8e-10	39.6	Leucine Rich Repeat
`XP_057804356.1`	Pfam	`PF00560`	LRR_1	Repeat	147	168	1.8e-10	39.6	Leucine Rich Repeat
`XP_057804356.1`	Pfam	`PF00560`	LRR_1	Repeat	193	213	1.8e-10	39.6	Leucine Rich Repeat
`XP_057804356.1`	Pfam	`PF00069`	Pkinase	Domain	378	666	8.9e-32	111.2	Protein kinase domain
`XP_057804356.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	378	667	3.9e-33	115.6	Protein tyrosine and serine/threonine kinase
`XP_057804357.1`	Pfam	`PF08263`	LRRNT_2	Family	33	70	4.5e-09	37.1	Leucine rich repeat N-terminal domain
`XP_057804357.1`	Pfam	`PF00560`	LRR_1	Repeat	100	122	1.3e-10	40.0	Leucine Rich Repeat
`XP_057804357.1`	Pfam	`PF00560`	LRR_1	Repeat	147	168	1.3e-10	40.0	Leucine Rich Repeat
`XP_057804357.1`	Pfam	`PF00560`	LRR_1	Repeat	193	213	1.3e-10	40.0	Leucine Rich Repeat
`XP_057804357.1`	Pfam	`PF00069`	Pkinase	Domain	378	640	1.2e-33	117.4	Protein kinase domain
`XP_057804357.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	378	641	1.9e-34	119.9	Protein tyrosine and serine/threonine kinase
`XP_057804359.1`	Pfam	`PF08263`	LRRNT_2	Family	33	70	4.5e-09	37.1	Leucine rich repeat N-terminal domain
`XP_057804359.1`	Pfam	`PF00560`	LRR_1	Repeat	100	122	1.3e-10	40.0	Leucine Rich Repeat
`XP_057804359.1`	Pfam	`PF00560`	LRR_1	Repeat	147	168	1.3e-10	40.0	Leucine Rich Repeat
`XP_057804359.1`	Pfam	`PF00560`	LRR_1	Repeat	193	213	1.3e-10	40.0	Leucine Rich Repeat
`XP_057804359.1`	Pfam	`PF00069`	Pkinase	Domain	378	640	1.2e-33	117.4	Protein kinase domain
`XP_057804359.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	378	641	1.9e-34	119.9	Protein tyrosine and serine/threonine kinase
`XP_057804360.1`	Pfam	`PF08263`	LRRNT_2	Family	33	70	4.5e-09	37.1	Leucine rich repeat N-terminal domain
`XP_057804360.1`	Pfam	`PF00560`	LRR_1	Repeat	100	122	1.3e-10	40.0	Leucine Rich Repeat
`XP_057804360.1`	Pfam	`PF00560`	LRR_1	Repeat	147	168	1.3e-10	40.0	Leucine Rich Repeat
`XP_057804360.1`	Pfam	`PF00560`	LRR_1	Repeat	193	213	1.3e-10	40.0	Leucine Rich Repeat
`XP_057804360.1`	Pfam	`PF00069`	Pkinase	Domain	378	640	1.2e-33	117.4	Protein kinase domain
`XP_057804360.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	378	641	1.9e-34	119.9	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057948376.1
AATGGGCATTTCTTTATTTGTTGCTTAATGATTAGGTCATCTCATCTGCATGATTGATTACTCTCTTTTTTGCATTTATTATATATGTATGCTTTAATTAATTTAATTTTCTTTCTTGTTCGTCCACCTGCAAAATTAAAAAGAAGGTCGTATTTGCGGTGGAGTGGCTACTAAGTGCAATAATGTTGAACAACCTAACCAAATATAATTCATAACCATTTTGACTGAATTAATATTAGTTGAGAAGTGGTTGCATCTTA...

XM_057948372.1
TACGTTAATCGATTCCACAATAAAGAGAAAAAGGGATATCGAGATTGGTGCGAGCAGACTACGTTGGCTTGACGGAGACAACTAATTCTTGAACTAATCTCAACAAAATATATATCTCCACACAAACACAACCAACACTTTTTTTCTTCTCTTTTCTTTTTTCAATTTGCTCCCACAAATTCTCCTCAACTTTCATCTTCTTCTTTATCAACGCCAACAAGAAAAGAGATGCTACAAAAGGAAAGAATGTGCAAAAGTAG...

CDS

5 records

下载 CDS FASTA

LOC131019795
ATGATGAAGCTGCAACATTCCTCATTCTCAACATGTTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTACATGGTGACTATGATGAGTAGTGATCTCAGCTCGGACCGCGACGCCCTTCTTGATTTCGCCTCCGCCATGACTCATGCGAGGAGACTCAACTGGAGAAACGCTTCCACACTTTGCACCTCTTGGGCTGGAGTCACTTGCTCTTCAGACGGCAGCCGGGTGGTGGCCCTCCGCCTGCCCGCCTACGGACTGCT...

Protein

5 records

下载 Protein FASTA

XP_057804355.1
MMKLQHSSFSTCCFFFFFFFFFYMVTMMSSDLSSDRDALLDFASAMTHARRLNWRNASTLCTSWAGVTCSSDGSRVVALRLPAYGLLGPLPENTLARLDSLTTLSLRSNYLNGTLPSDLLSLDSLRYVNLQQNRFTGDIPSFQSPLLNVVDFSFNSLTGNIPQTLQNLTRLTALFLQNNSLSGFIPDLNLPELKQLNFSNNNLNGSVPSHLQRFSASSFNGNSKLCGKPLQSCHVASPPPSPSPSPSPSPAPSPSPPPPP...

XP_057804356.1
MMKLQHSSFSTCCFFFFFFFFFYMVTMMSSDLSSDRDALLDFASAMTHARRLNWRNASTLCTSWAGVTCSSDGSRVVALRLPAYGLLGPLPENTLARLDSLTTLSLRSNYLNGTLPSDLLSLDSLRYVNLQQNRFTGDIPSFQSPLLNVVDFSFNSLTGNIPQTLQNLTRLTALFLQNNSLSGFIPDLNLPELKQLNFSNNNLNGSVPSHLQRFSASSFNGNSKLCGKPLQSCHVASPPPSPSPSPSPSPAPSPSPPPPP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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