当前解析结果
SmilChr04G001088| 统一新 Gene ID | SmilChr04G001088 |
|---|---|
| 名称 | SmilChr04G001088 |
| 描述 | receptor-like protein kinase FERONIA |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 15601917 - 15605615 / - |
| NCBI Gene ID | LOC131019794 |
|---|---|
| GeneID | 131019794 |
| locus_tag | - |
| NCBI Name | LOC131019794 |
| 原始查询 | SmilChr04G001088 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor-like protein kinase FERONIA |
| 产物 | receptor-like protein kinase FERONIA |
| Arabidopsis | AT3G51550 (FER)Malectin/receptor-like protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:824318] identity=71.7; qcov=0.99; evalue=0; confidence=high |
| Rice | Os01g0769700 (DRUS2)- identity=65.5; qcov=0.981; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF11721 (Malectin); PF12819 (Malectin_like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019794 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057804354.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057804354.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057804354.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057804354.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057804354.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:15602600 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr4:15602978 |
CA |
C |
1bp_deletion | frameshift_variant | 1 | B127 |
Chr4:15602978 |
CA |
C |
1bp_deletion | CDS_variant | 1 | B127 |
Chr4:15603324 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B35,B52 |
Chr4:15603339 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C18,C2,C35 |
Chr4:15603370 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B35,B52,C75 |
Chr4:15603993 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B131,B22,C64 |
Chr4:15604120 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B124,B79,D11 |
Chr4:15604140 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B30,B81,C6 |
Chr4:15604493 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057804354.1PF11721
Malectin 37-173 aa
PF12819
Malectin_like 38-407 aa
PF11721
Malectin 300-370 aa
PF00069
Pkinase 533-736 aa
PF07714
PK_Tyr_Ser-Thr 534-795 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804354.1 |
Pfam | PF11721 |
Malectin | Domain | 37 | 173 | 4.6e-17 | 63.2 | Malectin domain |
XP_057804354.1 |
Pfam | PF12819 |
Malectin_like | Domain | 38 | 407 | 7.4e-30 | 105.1 | Malectin-like domain |
XP_057804354.1 |
Pfam | PF11721 |
Malectin | Domain | 300 | 370 | 4.6e-17 | 63.2 | Malectin domain |
XP_057804354.1 |
Pfam | PF00069 |
Pkinase | Domain | 533 | 736 | 1.9e-40 | 139.7 | Protein kinase domain |
XP_057804354.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 534 | 795 | 6.6e-48 | 164.0 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。