Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G001091

染色体: Chr04 坐标: 15618743-15622884 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G001091
名称SmilChr04G001091
描述uncharacterized SmilChr04G001091
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向15618743 - 15622884 / +

ID 对照

NCBI Gene IDLOC131019809
GeneID131019809
locus_tag-
NCBI NameLOC131019809
原始查询SmilChr04G001091

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:818439]; symbol=AT2G38570; hit=AT2G38570; species=arabidopsis; confidence=high
产物uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:818439]; symbol=AT2G38570; hit=AT2G38570; species=arabidopsis; confidence=high
ArabidopsisAT2G38570 (AT2G38570)
uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:818439]
identity=57.1; qcov=0.739; evalue=3.33e-65; confidence=high
RiceOs03g0334100
-
identity=56.6; qcov=0.49; evalue=2.89e-38; confidence=medium
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131019809

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057804385.1
2 Chloroplast stroma 叶绿体基质 1.00000 XP_057804388.1
3 Cytoplasm 细胞质 0.40000 XP_057804393.1
4 Cytosol 细胞质基质 0.40000 XP_057804393.1
5 Chloroplast thylakoid 类囊体 0.20000 XP_057804390.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:15619663 G A EMS_canonical_SNV CDS_variant 3 B30,B71,C80
Chr4:15619671 G A EMS_canonical_SNV CDS_variant 1 D11
Chr4:15619721 C T EMS_canonical_SNV CDS_variant 3 B129,C64,C66
Chr4:15619732 AG A 1bp_deletion frameshift_variant 12 A15,B35,B71,B90,B92,C14,C39,C4,C44,C48,C50,C54
Chr4:15619735 C T EMS_canonical_SNV CDS_variant 1 C85
Chr4:15619758 C T EMS_canonical_SNV CDS_variant 3 B91,C82,D7
Chr4:15619786 G A EMS_canonical_SNV CDS_variant 3 B30,B71,C80
Chr4:15619836 G A EMS_canonical_SNV CDS_variant 2 C23,C25
Chr4:15619887 C T EMS_canonical_SNV CDS_variant 2 A21,B13
Chr4:15619970 G A EMS_canonical_SNV CDS_variant 1 B67
Chr4:15619994 G A EMS_canonical_SNV CDS_variant 2 A21,B13
Chr4:15619995 C T EMS_canonical_SNV CDS_variant 3 B133,C14,C74

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

14 records

下载 cDNA FASTA
XM_057948410.1
GCGAAATTCCTCCTGCTCACGGACCAGATCAAGCTGTGGTTTGAGCGGCGGAATTGAAGCGCGGTGGCGGTGGCGGTGGGGGATACGAGAGAGGCCATGGAAATTGAGCGCTGTTTGGAATTGGCGCCTCAATCCTAGCGTTAATGACTCCAATAGTACCAACTCTGCTCGAGATTTGGGACTACGGGAAGGGAGCAGAGGTAGCAAGGGCTGGAAGGATGAATCGGAAATGGAGGAGCTGGCTGCAGATAGAGGAATCG...
XM_057948414.1
GCGAAATTCCTCCTGCTCACGGACCAGATCAAGCTGTGGTTTGAGCGGCGGAATTGAAGCGCGGTGGCGGTGGCGGTGGGGGATACGAGAGAGGCCATGGAAATTGAGCGCTGTTTGGAATTGGCGCCTCAATCCTAGCGTTAATGACTCCAATAGTACCAACTCTGCTCGAGATTTGGGACTACGGGAAGGGAGCAGAGGTAGCAAGGGCTGGAAGGATGAATCGGAAATGGAGGAGCTGGCTGCAGATAGAGGAATCG...

CDS

14 records

下载 CDS FASTA
LOC131019809
ATGTATGACTGCGTTCAGTCGCTCAATTTGCATCCCCAATTTTCGTCCAGAATCTATAAATTAGGGTCTACAACATGTCTCAGACTGCCCAAATTCGTGAAATGCAGCGTTAATGACTCCAATAGTACCAACTCTGCTCGAGATTTGGGACTACGGGAAGGGAGCAGAGGTAGCAAGGGCTGGAAGGATGAATCGGAAATGGAGGAGCTGGCTGCAGATAGAGGAATCGAGGAAGTCTTCAAGTTTAGAGCTACCGAGAA...
LOC131019809
ATGTATGACTGCGTTCAGTCGCTCAATTTGCATCCCCAATTTTCGTCCAGAATCTATAAATTAGGGTCTACAACATGTCTCAGACTGCCCAAATTCGTGAAATGCAGCGTTAATGACTCCAATAGTACCAACTCTGCTCGAGATTTGGGACTACGGGAAGGGAGCAGAGGTAGCAAGGGCTGGAAGGATGAATCGGAAATGGAGGAGCTGGCTGCAGATAGAGGAATCGAGGAAGTCTTCAAGTTTAGAGCTACCGAGAA...

Protein

14 records

下载 Protein FASTA
XP_057804385.1
MYDCVQSLNLHPQFSSRIYKLGSTTCLRLPKFVKCSVNDSNSTNSARDLGLREGSRGSKGWKDESEMEELAADRGIEEVFKFRATEKDYKLVKEDDIDSEMEGFDGRRRIDAAKSRRQMMRRSSVMAKQVISIRSALTLGFVTQLWVDTSSWVVMVVEVKPSLLSGDSERFLLKEITQVVLEIQFELHCNSSSFYFYPHQIWEVIKLMQMVGDVVLVEDEIVMEDDTKLIGLETLVGYTVTTRRRQTIGKVRGYTFSISS...
XP_057804386.1
MYDCVQSLNLHPQFSSRIYKLGSTTCLRLPKFVKCSVNDSNSTNSARDLGLREGSRGSKGWKDESEMEELAADRGIEEVFKFRATEKDYKLVKEDDIDSEMEGFDGRRRIDAAKSRRQMMRRSSVMAKQVISIRSALTLGFVTQLWVDTSSWVVMVVEVKPSLLSGDSERFLLKEITQVVLEIQFELHCNSSSFYFYPHQIWEVIKLMQMVGDVVLVEDEIVMEDDTKLIGLETLVRGYTFSISSGTLESLELDSFGISI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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