Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001093`

染色体: Chr04 坐标: 15639752-15647311 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001093`
名称	SmilChr04G001093
描述	phospholipid-transporting ATPase 1-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	15639752 - 15647311 / `+`

ID 对照

NCBI Gene ID	`LOC131019790`
GeneID	`131019790`
locus_tag	`-`
NCBI Name	`LOC131019790`
原始查询	`SmilChr04G001093`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phospholipid-transporting ATPase 1-like
产物	phospholipid-transporting ATPase 1-like
Arabidopsis	`AT5G04930` (ALA1) aminophospholipid ATPase 1 [Source:NCBI gene (formerly Entrezgene);Acc:830375] identity=55.1; qcov=0.987; evalue=0; confidence=high
Rice	`Os01g0277600` (osALA2) - identity=54.8; qcov=0.977; evalue=0; confidence=high
GO	GO:0000287 (magnesium ion binding); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0016887 (ATP hydrolysis activity); GO:0045332 (phospholipid translocation); GO:0140326 (ATPase-coupled intramembrane lipid carrier activity)
KEGG	smil04148 (Efferocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF13246 (Cation_ATPase); PF16209 (PhoLip_ATPase_N); PF16212 (PhoLip_ATPase_C)
InterPro	-
eggNOG	-
NR	GeneID:131019790

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endosome membrane	内体膜	0.60000	`XP_057804343.1`
2	Trans-golgi network	Trans-golgi network	0.60000	`XP_057804345.1`
3	Endosome	内体	0.60000	`XP_057804345.1`
4	Endoplasmic reticulum	内质网	0.40000	`XP_057804341.1`
5	Vacuole	液泡	0.40000	`XP_057804341.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:15641241`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C57
`Chr4:15641624`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:15642323`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C23,D11
`Chr4:15643455`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B61
`Chr4:15643455`	`TG`	`T`	1bp_deletion	CDS_variant	1	B61
`Chr4:15643614`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C44
`Chr4:15643922`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B120,B62
`Chr4:15643990`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B67,C16,C62,D3
`Chr4:15644247`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:15644454`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B67,C16,C62,D3
`Chr4:15644894`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B2,B30,C3,C34,C79
`Chr4:15645406`	`GC`	`G`	1bp_deletion	frameshift_variant	1	C24

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804341.1

1348 aa

674

1348

PhoLip_ATPase_N

Cation_ATPase

PhoLip_ATPase_C

PF16209 PhoLip_ATPase_N 174-239 aa PF13246 Cation_ATPase 677-841 aa PF16212 PhoLip_ATPase_C 1043-1321 aa

XP_057804342.1

1310 aa

655

1310

PhoLip_ATPase_N

Cation_ATPase

PhoLip_ATPase_C

PF16209 PhoLip_ATPase_N 174-239 aa PF13246 Cation_ATPase 677-841 aa PF16212 PhoLip_ATPase_C 1043-1283 aa

XP_057804343.1

1233 aa

616

1233

PhoLip_ATPase_N

Cation_ATPase

PhoLip_ATPase_C

PF16209 PhoLip_ATPase_N 59-124 aa PF13246 Cation_ATPase 562-726 aa PF16212 PhoLip_ATPase_C 928-1206 aa

XP_057804345.1

1190 aa

595

1190

PhoLip_ATPase_N

Cation_ATPase

PhoLip_ATPase_C

PF16209 PhoLip_ATPase_N 16-81 aa PF13246 Cation_ATPase 519-683 aa PF16212 PhoLip_ATPase_C 885-1163 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804341.1`	Pfam	`PF16209`	PhoLip_ATPase_N	Family	174	239	5.7e-23	81.1	Phospholipid-translocating ATPase N-terminal
`XP_057804341.1`	Pfam	`PF13246`	Cation_ATPase	Family	677	841	3.7e-13	50.4	P-type ATPase, cytoplasmic domain N
`XP_057804341.1`	Pfam	`PF16212`	PhoLip_ATPase_C	Family	1043	1321	3.3e-71	240.7	Phospholipid-translocating P-type ATPase C-terminal
`XP_057804342.1`	Pfam	`PF16209`	PhoLip_ATPase_N	Family	174	239	5.6e-23	81.1	Phospholipid-translocating ATPase N-terminal
`XP_057804342.1`	Pfam	`PF13246`	Cation_ATPase	Family	677	841	3.5e-13	50.5	P-type ATPase, cytoplasmic domain N
`XP_057804342.1`	Pfam	`PF16212`	PhoLip_ATPase_C	Family	1043	1283	4.3e-79	266.5	Phospholipid-translocating P-type ATPase C-terminal
`XP_057804343.1`	Pfam	`PF16209`	PhoLip_ATPase_N	Family	59	124	4.8e-23	81.4	Phospholipid-translocating ATPase N-terminal
`XP_057804343.1`	Pfam	`PF13246`	Cation_ATPase	Family	562	726	3.2e-13	50.6	P-type ATPase, cytoplasmic domain N
`XP_057804343.1`	Pfam	`PF16212`	PhoLip_ATPase_C	Family	928	1206	2.7e-71	240.9	Phospholipid-translocating P-type ATPase C-terminal
`XP_057804345.1`	Pfam	`PF16209`	PhoLip_ATPase_N	Family	16	81	4.5e-23	81.4	Phospholipid-translocating ATPase N-terminal
`XP_057804345.1`	Pfam	`PF13246`	Cation_ATPase	Family	519	683	3e-13	50.7	P-type ATPase, cytoplasmic domain N
`XP_057804345.1`	Pfam	`PF16212`	PhoLip_ATPase_C	Family	885	1163	2.6e-71	241.0	Phospholipid-translocating P-type ATPase C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XR_009100458.1
TCCACCGTATAATCTGTCCCACTCCTCTCTCTTTTCACTCCTAGCTTTCCCTTCGATCTCAATCTAAAATCCCAACCACCATTGCTTCAGTTTCAGAAGCAAACTGCATTTTCTTCTAATTCTAGGTTATTCTAATCACTTGTTTACTAAAGTTTGACAATTTAATTTAGTTAATTCTTGTTATTTTTCGCGAAAAAAAAAAAAGAAACGAAAAAGAAAGCTGATCAGGATTCAGAAACAGAGTGGTGAGAAGCTGATAA...

XM_057948358.1
ATTCCACCGTATAATCTGTCCCACTCCTCTCTCTTTTCACTCCTAGCTTTCCCTTCGATCTCAATCTAAAATCCCAACCACCATTGCTTCAGTTTCAGAAGCAAACTGCATTTTCTTCTAATTCTAGGTTATTCTAATCACTTGTTTACTAAAGTTTGACAATTTAATTTAGTTAATTCTTGTTATTTTTCGCGAAAAAAAAAAAAGAAACGAAAAAGAAAGCTGATCAGGATTCAGAAACAGAGTGGTGAGAAGCTGAT...

CDS

4 records

下载 CDS FASTA

LOC131019790
ATGTCTTCCGATAAGCCATTGCTGCCCGAATCTGAACCATTCTCTACTCCAAACCCCCAGCCCCTACATCAGCGCCTTAACTCGTCCTTGAGATTCAGCTCATTGCGATGTTTGCGCCGTGGCAGATCATTCTCTTCCGGGGTGTCTGATGAGACGCAAGATTGCGATTTGTATCATCTGAAGGAGTTTGAGAATAATTCTGCTGCACTTGAAGGTGAATCTCTTTCAGGAAATTTATCAGAACGCCCTGCATTCCAGCT...

Protein

4 records

下载 Protein FASTA

XP_057804341.1
MSSDKPLLPESEPFSTPNPQPLHQRLNSSLRFSSLRCLRRGRSFSSGVSDETQDCDLYHLKEFENNSAALEGESLSGNLSERPAFQLGRKGFLSFDLRQQCPSRARKRFVSWGGVMDVQQNDKAVEVSGASSHISPSWLQAVDKPQTSQRSERFFHLSMQLEDNMSRHDNPRLIHINDPKTTCDNSQFSGNEIRTSKYTLLNFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLTVTAVKDGYEDW...

XP_057804342.1
MSSDKPLLPESEPFSTPNPQPLHQRLNSSLRFSSLRCLRRGRSFSSGVSDETQDCDLYHLKEFENNSAALEGESLSGNLSERPAFQLGRKGFLSFDLRQQCPSRARKRFVSWGGVMDVQQNDKAVEVSGASSHISPSWLQAVDKPQTSQRSERFFHLSMQLEDNMSRHDNPRLIHINDPKTTCDNSQFSGNEIRTSKYTLLNFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLTVTAVKDGYEDW...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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