当前解析结果
SmilChr04G001108| 统一新 Gene ID | SmilChr04G001108 |
|---|---|
| 名称 | SmilChr04G001108 |
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 15898378 - 15900123 / - |
| NCBI Gene ID | LOC131023067 |
|---|---|
| GeneID | 131023067 |
| locus_tag | - |
| NCBI Name | LOC131023067 |
| 原始查询 | SmilChr04G001108 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 产物 | protein FAR1-RELATED SEQUENCE 5-like |
| Arabidopsis | AT4G38180 (FRS5)FAR1-related sequence 5 [Source:NCBI gene (formerly Entrezgene);Acc:829974] identity=32.9; qcov=0.78; evalue=1.65e-89; confidence=low |
| Rice | Os06g0166100- identity=36.5; qcov=0.876; evalue=3.36e-116; confidence=medium |
| GO | GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF10551 (MULE); PF21056 (ZSWIM1-3_RNaseH-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023067 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057808592.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057808592.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057808592.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057808592.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057808592.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:15898392 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B64 |
Chr4:15898392 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
Chr4:15898422 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B106,B66,B67,C80,C81 |
Chr4:15898436 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A4,B118,B126,B63,C57 |
Chr4:15898501 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B100,C11,C3,C34 |
Chr4:15898514 |
AC |
A |
1bp_deletion | frameshift_variant | 2 | C24,C3 |
Chr4:15898514 |
AC |
A |
1bp_deletion | CDS_variant | 2 | C24,C3 |
Chr4:15898516 |
TGA |
T |
2bp_deletion | frameshift_variant | 2 | C24,C3 |
Chr4:15898516 |
TGA |
T |
2bp_deletion | CDS_variant | 2 | C24,C3 |
Chr4:15898589 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B130 |
Chr4:15898601 |
TC |
T |
1bp_deletion | frameshift_variant | 78 | A1,A10,A11,A14,A16,A19,A4,B101,B103,B11,B111,B118,B119,B123,B124,B128,B130,B131,B137,B140,B2,B21,B23,B3,B41,B47,B48,B51,B54,B57,B58,B59,B6,B67,B68,B7,B70,B78,B8,B88,B89,B92,B96,B99,C10,C13,C16,C17,C24,C25,C26,C28,C29,C3,C30,C37,C4,C43,C46,C48,C49,C52,C54,C55,C59,C62,C63,C66,C68,C71,C73,C74,C75,C8,C83,D3,D5,D8 |
Chr4:15898649 |
AC |
A |
1bp_deletion | frameshift_variant | 10 | B137,B21,B41,B47,B99,C62,C73,C75,C79,D8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057808592.1PF21056
ZSWIM1-3_RNaseH-like 83-199 aa
PF10551
MULE 116-210 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808592.1 |
Pfam | PF21056 |
ZSWIM1-3_RNaseH-like | Domain | 83 | 199 | 3.1e-13 | 50.5 | Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain |
XP_057808592.1 |
Pfam | PF10551 |
MULE | Domain | 116 | 210 | 8e-29 | 100.6 | MULE transposase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。