当前解析结果
SmilChr04G001126| 统一新 Gene ID | SmilChr04G001126 |
|---|---|
| 名称 | SmilChr04G001126 |
| 描述 | uncharacterized SmilChr04G001126 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 16314342 - 16316873 / - |
| NCBI Gene ID | LOC131023071 |
|---|---|
| GeneID | 131023071 |
| locus_tag | - |
| NCBI Name | LOC131023071 |
| 原始查询 | SmilChr04G001126 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0142900; species=rice; confidence=weak |
| 产物 | hit=Os12g0142900; species=rice; confidence=weak |
| Arabidopsis | AT2G15180 (AT2G15180)Zinc knuckle (CCHC-type) family protein [Source:NCBI gene (formerly Entrezgene);Acc:816006] identity=37.1; qcov=0.083; evalue=2.53e-08; confidence=weak |
| Rice | Os12g0142900- identity=46.7; qcov=0.287; evalue=1.51e-66; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF00098 (zf-CCHC); PF03732 (PEG10_N-capsid); PF30901 (PEG10-RTL1_C-capsid) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023071 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057808596.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057808596.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057808596.1 |
| 4 | Cytoplasmic granule | 细胞质颗粒 | 0.40000 | XP_057808596.1 |
| 5 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.40000 | XP_057808596.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:16314388 |
C |
CT |
1bp_insertion | frameshift_variant | 1 | C8 |
Chr4:16314388 |
C |
CT |
1bp_insertion | CDS_variant | 1 | C8 |
Chr4:16314440 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C43 |
Chr4:16314626 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C4,D10 |
Chr4:16314703 |
GC |
G |
1bp_deletion | frameshift_variant | 8 | B13,B131,B30,B51,B60,C2,C43,D10 |
Chr4:16314723 |
C |
CG |
1bp_insertion | frameshift_variant | 6 | A14,B10,B102,B134,B43,C38 |
Chr4:16314726 |
ATC |
A |
2bp_deletion | frameshift_variant | 5 | A14,B10,B102,B134,B43 |
Chr4:16314726 |
ATC |
A |
2bp_deletion | CDS_variant | 5 | A14,B10,B102,B134,B43 |
Chr4:16314751 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
Chr4:16314762 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A6,B124,C38,C72 |
Chr4:16314778 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C46,C53 |
Chr4:16314839 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B1,B42,B48,B94,C77 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057808596.1PF03732
PEG10_N-capsid 84-166 aa
PF30901
PEG10-RTL1_C-capsid 176-249 aa
PF00098
zf-CCHC 314-331 aa
PF00078
RVT_1 685-827 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808596.1 |
Pfam | PF03732 |
PEG10_N-capsid | Domain | 84 | 166 | 1.7e-19 | 70.6 | Retrotransposon-derived protein PEG10, N-terminal capsid-like domain |
XP_057808596.1 |
Pfam | PF30901 |
PEG10-RTL1_C-capsid | Domain | 176 | 249 | 5.8e-07 | 30.1 | PEG10/RTL1, C-terminal capsid-like domain |
XP_057808596.1 |
Pfam | PF00098 |
zf-CCHC | Domain | 314 | 331 | 1.7e-05 | 25.4 | Zinc knuckle |
XP_057808596.1 |
Pfam | PF00078 |
RVT_1 | Domain | 685 | 827 | 4.4e-37 | 128.6 | Reverse transcriptase (RNA-dependent DNA polymerase) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。