当前解析结果
SmilChr04G001149| 统一新 Gene ID | SmilChr04G001149 |
|---|---|
| 名称 | SmilChr04G001149 |
| 描述 | cinnamoyl-CoA reductase 1 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 16962842 - 16969801 / + |
| NCBI Gene ID | LOC131019851 |
|---|---|
| GeneID | 131019851 |
| locus_tag | - |
| NCBI Name | LOC131019851 |
| 原始查询 | SmilChr04G001149 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cinnamoyl-CoA reductase 1 |
| 产物 | cinnamoyl-CoA reductase 1 |
| Arabidopsis | AT2G02400 (AT2G02400)NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:814771] identity=69.3; qcov=0.897; evalue=1.19e-126; confidence=high |
| Rice | Os01g0978400 (OsCCR26)- identity=56.9; qcov=0.886; evalue=6.97e-76; confidence=high |
| GO | GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor) |
| KEGG | - |
| Pfam | PF01073 (3Beta_HSD); PF01370 (Epimerase); PF02719 (Polysacc_synt_2); PF07993 (NAD_binding_4); PF08659 (KR); PF13460 (NAD_binding_10); PF16363 (GDP_Man_Dehyd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019851 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057804447.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057804447.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057804447.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057804447.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057804447.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:16963438 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr4:16963490 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr4:16963553 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B104 |
Chr4:16963553 |
TC |
T |
1bp_deletion | CDS_variant | 1 | B104 |
Chr4:16963636 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B52 |
Chr4:16963712 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B17 |
Chr4:16963712 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B17 |
Chr4:16963715 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B17 |
Chr4:16967647 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A16,B83,C59 |
Chr4:16967766 |
GCA |
G |
2bp_deletion | frameshift_variant | 1 | B100 |
Chr4:16967766 |
GCA |
G |
2bp_deletion | CDS_variant | 1 | B100 |
Chr4:16967773 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B114 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057804447.1PF01370
Epimerase 14-253 aa
PF08659
KR 15-147 aa
PF01073
3Beta_HSD 16-181 aa
PF16363
GDP_Man_Dehyd 16-271 aa
PF13460
NAD_binding_10 18-141 aa
PF07993
NAD_binding_4 88-201 aa
XP_057804448.1PF02719
Polysacc_synt_2 14-144 aa
PF01370
Epimerase 14-253 aa
PF08659
KR 15-147 aa
PF01073
3Beta_HSD 16-181 aa
PF16363
GDP_Man_Dehyd 16-271 aa
PF13460
NAD_binding_10 18-141 aa
PF07993
NAD_binding_4 88-201 aa
XP_057804450.1PF02719
Polysacc_synt_2 14-144 aa
PF01370
Epimerase 14-253 aa
PF08659
KR 15-147 aa
PF16363
GDP_Man_Dehyd 16-135 aa
PF01073
3Beta_HSD 16-181 aa
PF13460
NAD_binding_10 18-141 aa
PF07993
NAD_binding_4 88-201 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804447.1 |
Pfam | PF01370 |
Epimerase | Family | 14 | 253 | 4.4e-25 | 89.2 | NAD dependent epimerase/dehydratase family |
XP_057804447.1 |
Pfam | PF08659 |
KR | Family | 15 | 147 | 6e-06 | 27.0 | KR domain |
XP_057804447.1 |
Pfam | PF01073 |
3Beta_HSD | Family | 16 | 181 | 2e-17 | 63.9 | 3-beta hydroxysteroid dehydrogenase/isomerase family |
XP_057804447.1 |
Pfam | PF16363 |
GDP_Man_Dehyd | Domain | 16 | 271 | 1.2e-13 | 51.9 | GDP-mannose 4,6 dehydratase |
XP_057804447.1 |
Pfam | PF13460 |
NAD_binding_10 | Domain | 18 | 141 | 1.2e-09 | 39.0 | NAD(P)H-binding |
XP_057804447.1 |
Pfam | PF07993 |
NAD_binding_4 | Family | 88 | 201 | 1.6e-08 | 34.8 | Male sterility protein |
XP_057804448.1 |
Pfam | PF02719 |
Polysacc_synt_2 | Family | 14 | 144 | 0.00017 | 21.6 | Polysaccharide biosynthesis protein |
XP_057804448.1 |
Pfam | PF01370 |
Epimerase | Family | 14 | 253 | 2.8e-25 | 89.9 | NAD dependent epimerase/dehydratase family |
XP_057804448.1 |
Pfam | PF08659 |
KR | Family | 15 | 147 | 4.5e-06 | 27.4 | KR domain |
XP_057804448.1 |
Pfam | PF01073 |
3Beta_HSD | Family | 16 | 181 | 1.3e-17 | 64.5 | 3-beta hydroxysteroid dehydrogenase/isomerase family |
XP_057804448.1 |
Pfam | PF16363 |
GDP_Man_Dehyd | Domain | 16 | 271 | 7.8e-14 | 52.6 | GDP-mannose 4,6 dehydratase |
XP_057804448.1 |
Pfam | PF13460 |
NAD_binding_10 | Domain | 18 | 141 | 8.9e-10 | 39.4 | NAD(P)H-binding |
XP_057804448.1 |
Pfam | PF07993 |
NAD_binding_4 | Family | 88 | 201 | 9.6e-09 | 35.5 | Male sterility protein |
XP_057804450.1 |
Pfam | PF02719 |
Polysacc_synt_2 | Family | 14 | 144 | 0.00014 | 21.9 | Polysaccharide biosynthesis protein |
XP_057804450.1 |
Pfam | PF01370 |
Epimerase | Family | 14 | 253 | 2.8e-25 | 89.8 | NAD dependent epimerase/dehydratase family |
XP_057804450.1 |
Pfam | PF08659 |
KR | Family | 15 | 147 | 3.7e-06 | 27.7 | KR domain |
XP_057804450.1 |
Pfam | PF16363 |
GDP_Man_Dehyd | Domain | 16 | 135 | 1.5e-12 | 48.4 | GDP-mannose 4,6 dehydratase |
XP_057804450.1 |
Pfam | PF01073 |
3Beta_HSD | Family | 16 | 181 | 1.1e-17 | 64.7 | 3-beta hydroxysteroid dehydrogenase/isomerase family |
XP_057804450.1 |
Pfam | PF13460 |
NAD_binding_10 | Domain | 18 | 141 | 7e-10 | 39.8 | NAD(P)H-binding |
XP_057804450.1 |
Pfam | PF07993 |
NAD_binding_4 | Family | 88 | 201 | 7.6e-09 | 35.8 | Male sterility protein |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。