当前解析结果
SmilChr04G001194| 统一新 Gene ID | SmilChr04G001194 |
|---|---|
| 名称 | SmilChr04G001194 |
| 描述 | protein STICHEL-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 18275204 - 18281066 / + |
| NCBI Gene ID | LOC131023723 |
|---|---|
| GeneID | 131023723 |
| locus_tag | - |
| NCBI Name | LOC131023723 |
| 原始查询 | SmilChr04G001194 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein STICHEL-like |
| 产物 | protein STICHEL-like |
| Arabidopsis | AT2G02480 (STI)AAA-type ATPase family protein [Source:NCBI gene (formerly Entrezgene);Acc:814777] identity=51.9; qcov=1.01; evalue=0; confidence=high |
| Rice | Os12g0209300- identity=41.7; qcov=0.969; evalue=0; confidence=medium |
| GO | GO:0003689 (DNA clamp loader activity); GO:0003887 (DNA-directed DNA polymerase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005663 (DNA replication factor C complex); GO:0006261 (DNA-templated DNA replication); GO:0006281 (DNA repair); GO:0009360 (DNA polymerase III complex); GO:0016887 (ATP hydrolysis activity) |
| KEGG | - |
| Pfam | PF00004 (AAA); PF12169 (DNA_pol3_gamma3); PF13177 (DNA_pol3_delta2); PF22608 (DNAX_ATPase_lid); PF23007 (DnaA_N-like_STI) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023723 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057809267.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057809267.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057809267.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057809267.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057809267.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:18276267 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | A20 |
Chr4:18276267 |
AT |
A |
1bp_deletion | CDS_variant | 1 | A20 |
Chr4:18276486 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:18276699 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr4:18277968 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | C27 |
Chr4:18277968 |
TG |
T |
1bp_deletion | CDS_variant | 1 | C27 |
Chr4:18278564 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C45 |
Chr4:18278918 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:18278973 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B63,B8,C76 |
Chr4:18279810 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr4:18279831 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057809267.1PF13177
DNA_pol3_delta2 467-624 aa
PF00004
AAA 488-623 aa
PF22608
DNAX_ATPase_lid 631-675 aa
PF12169
DNA_pol3_gamma3 680-742 aa
PF23007
DnaA_N-like_STI 894-976 aa
XP_057809268.1PF13177
DNA_pol3_delta2 293-450 aa
PF00004
AAA 314-449 aa
PF22608
DNAX_ATPase_lid 457-501 aa
PF12169
DNA_pol3_gamma3 506-568 aa
PF23007
DnaA_N-like_STI 720-802 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057809267.1 |
Pfam | PF13177 |
DNA_pol3_delta2 | Domain | 467 | 624 | 3.4e-23 | 83.1 | DNA polymerase III, delta subunit |
XP_057809267.1 |
Pfam | PF00004 |
AAA | Domain | 488 | 623 | 1.9e-07 | 32.3 | ATPase family associated with various cellular activities (AAA) |
XP_057809267.1 |
Pfam | PF22608 |
DNAX_ATPase_lid | Domain | 631 | 675 | 3.7e-09 | 36.9 | DNA polymerase III clamp loader subunit, ATPase lid domain |
XP_057809267.1 |
Pfam | PF12169 |
DNA_pol3_gamma3 | Family | 680 | 742 | 6.3e-07 | 30.0 | DNA polymerase III subunits gamma and tau domain III |
XP_057809267.1 |
Pfam | PF23007 |
DnaA_N-like_STI | Domain | 894 | 976 | 2.6e-28 | 98.7 | STICHEL, DnaA_N-like alpha-beta domain |
XP_057809268.1 |
Pfam | PF13177 |
DNA_pol3_delta2 | Domain | 293 | 450 | 3.8e-23 | 83.0 | DNA polymerase III, delta subunit |
XP_057809268.1 |
Pfam | PF00004 |
AAA | Domain | 314 | 449 | 1.5e-07 | 32.6 | ATPase family associated with various cellular activities (AAA) |
XP_057809268.1 |
Pfam | PF22608 |
DNAX_ATPase_lid | Domain | 457 | 501 | 2.5e-09 | 37.5 | DNA polymerase III clamp loader subunit, ATPase lid domain |
XP_057809268.1 |
Pfam | PF12169 |
DNA_pol3_gamma3 | Family | 506 | 568 | 5.1e-07 | 30.3 | DNA polymerase III subunits gamma and tau domain III |
XP_057809268.1 |
Pfam | PF23007 |
DnaA_N-like_STI | Domain | 720 | 802 | 2.4e-28 | 98.8 | STICHEL, DnaA_N-like alpha-beta domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。